PDB: 1nhc Compound: polygalacturonase i Classification: HYDROLASE Entry date in PDB: 2003-11-25 Resolution [Å]: 1.70 R-Factor: 0.176

CHAIN: A SWISS-PROT/TREMBL: P26213    KEYWORD: Cell wall    Glycoprotein    Glycosidase    Hydrolase    Multigene family    Repeat    Signal    Zymogen    EC: 3.2.1.15 SCOP: b.80.1.3 All beta proteins    Single-stranded right-handed beta-helix    Pectin lyase-like    Galacturonase    Polygalacturonase    Fungus (Aspergillus niger), endo-polygalacturonase I GO:  polygalacturonase activity    carbohydrate metabolism    CHAIN: B SWISS-PROT/TREMBL: P26213    KEYWORD: Cell wall    Glycoprotein    Glycosidase    Hydrolase    Multigene family    Repeat    Signal    Zymogen    EC: 3.2.1.15 SCOP: b.80.1.3 All beta proteins    Single-stranded right-handed beta-helix    Pectin lyase-like    Galacturonase    Polygalacturonase    Fungus (Aspergillus niger), endo-polygalacturonase I GO:  polygalacturonase activity    carbohydrate metabolism    CHAIN: C SWISS-PROT/TREMBL: P26213    KEYWORD: Cell wall    Glycoprotein    Glycosidase    Hydrolase    Multigene family    Repeat    Signal    Zymogen    EC: 3.2.1.15 SCOP: b.80.1.3 All beta proteins    Single-stranded right-handed beta-helix    Pectin lyase-like    Galacturonase    Polygalacturonase    Fungus (Aspergillus niger), endo-polygalacturonase I GO:  polygalacturonase activity    carbohydrate metabolism    CHAIN: D SWISS-PROT/TREMBL: P26213    KEYWORD: Cell wall    Glycoprotein    Glycosidase    Hydrolase    Multigene family    Repeat    Signal    Zymogen    EC: 3.2.1.15 SCOP: b.80.1.3 All beta proteins    Single-stranded right-handed beta-helix    Pectin lyase-like    Galacturonase    Polygalacturonase    Fungus (Aspergillus niger), endo-polygalacturonase I GO:  polygalacturonase activity    carbohydrate metabolism    CHAIN: E SWISS-PROT/TREMBL: P26213    KEYWORD: Cell wall    Glycoprotein    Glycosidase    Hydrolase    Multigene family    Repeat    Signal    Zymogen    EC: 3.2.1.15 SCOP: b.80.1.3 All beta proteins    Single-stranded right-handed beta-helix    Pectin lyase-like    Galacturonase    Polygalacturonase    Fungus (Aspergillus niger), endo-polygalacturonase I GO:  polygalacturonase activity    carbohydrate metabolism    CHAIN: F SWISS-PROT/TREMBL: P26213    KEYWORD: Cell wall    Glycoprotein    Glycosidase    Hydrolase    Multigene family    Repeat    Signal    Zymogen    EC: 3.2.1.15 SCOP: b.80.1.3 All beta proteins    Single-stranded right-handed beta-helix    Pectin lyase-like    Galacturonase    Polygalacturonase    Fungus (Aspergillus niger), endo-polygalacturonase I GO:  polygalacturonase activity    carbohydrate metabolism

Image Source: PDB

Loops in ArchDB95 clusters

1nhc_A_35 - EH => SUBCLASS : 2.1.1
1nhc_A_99 - AR => SUBCLASS : 1.1.1
1nhc_A_103 - AR => SUBCLASS : 1.1.1
1nhc_A_52 - AR => SUBCLASS : 1.1.3
1nhc_A_194 - AR => SUBCLASS : 1.1.3
1nhc_A_99 - AR => SUBCLASS : 1.1.4
1nhc_A_188 - AR => SUBCLASS : 1.1.8
1nhc_A_208 - AR => SUBCLASS : 1.2.27
1nhc_A_158 - AR => SUBCLASS : 2.5.5
1nhc_A_202 - AR => SUBCLASS : 3.1.11
1nhc_A_59 - AR => SUBCLASS : 3.3.3
1nhc_A_329 - AR => SUBCLASS : 5.62.1

Loops in ArchDB-EC clusters

1nhc_A_40 - HE => SUBCLASS : 2.4.3

Loops not clustered in ArchDB

1nhc_A_329 - AR
1nhc_A_188 - AR
1nhc_A_158 - AR
1nhc_A_149 - AR
1nhc_A_135 - AR
1nhc_A_111 - AR
1nhc_A_103 - AR
1nhc_A_99 - AR
1nhc_A_95 - AR
1nhc_A_194 - AR
1nhc_A_202 - AR
1nhc_A_208 - AR
1nhc_A_312 - AR
1nhc_A_301 - AR
1nhc_A_272 - AR
1nhc_A_259 - AR
1nhc_A_243 - AR
1nhc_A_230 - AR
1nhc_A_224 - AR
1nhc_A_215 - AR
1nhc_A_82 - AR
1nhc_A_76 - AR
1nhc_A_66 - AR
1nhc_A_66 - AR
1nhc_A_76 - AR
1nhc_A_82 - AR
1nhc_A_95 - AR
1nhc_A_111 - AR
1nhc_A_135 - AR
1nhc_A_149 - AR
1nhc_A_215 - AR
1nhc_A_230 - AR
1nhc_A_224 - AR
1nhc_A_59 - AR
1nhc_A_52 - AR
1nhc_A_312 - AR
1nhc_A_301 - AR
1nhc_A_272 - AR
1nhc_A_259 - AR
1nhc_A_243 - AR
1nhc_A_171 - EH
1nhc_A_289 - HA
1nhc_A_289 - HA
1nhc_A_177 - HE

1ia5 A - percentage of sequence identity: 61
1ib4 A - percentage of sequence identity: 61
1ib4 B - percentage of sequence identity: 61
1nhc A - percentage of sequence identity: 100
1nhc B - percentage of sequence identity: 100
1nhc C - percentage of sequence identity: 100
1nhc D - percentage of sequence identity: 100
1nhc E - percentage of sequence identity: 100
1nhc F - percentage of sequence identity: 100