PDB: 1nnj Compound: formamidopyrimidine-DNA glycosylase Classification: HYDROLASE Entry date in PDB: 2003-02-11 Resolution [Å]: 1.90 R-Factor: 0.215

CHAIN: A SWISS-PROT/TREMBL: P42371    KEYWORD: 3D-structure    DNA repair    Glycosidase    Hydrolase    Zinc    Zinc-finger    EC: 3.2.2.23 SCOP: a.156.1.2 All alpha proteins    S13-like H2TH domain    S13-like H2TH domain    Middle domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Lactococcus lactis SCOP: b.113.1.1 All beta proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Lactococcus lactis SCOP: g.39.1.8 Small proteins    Glucocorticoid receptor-like (DNA-binding domain)    Glucocorticoid receptor-like (DNA-binding domain)    C-terminal, Zn-finger domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Lactococcus lactis GO:  zinc ion binding    DNA repair

Image Source: PDB

Loops in ArchDB40 clusters

1nnj_A_37 - HE => SUBCLASS : 3.14.1
1nnj_A_92 - HA => SUBCLASS : 2.2.2
1nnj_A_49 - HA => SUBCLASS : 2.3.1
1nnj_A_58 - HA => SUBCLASS : 3.4.1
1nnj_A_113 - EH => SUBCLASS : 1.3.1
1nnj_A_67 - AR => SUBCLASS : 4.30.1
1nnj_A_102 - AR => SUBCLASS : 5.15.1
1nnj_A_142 - HH => SUBCLASS : 4.19.2

Loops in ArchDB95 clusters

1nnj_A_113 - EH => SUBCLASS : 1.2.1
1nnj_A_67 - AR => SUBCLASS : 4.33.1
1nnj_A_102 - AR => SUBCLASS : 5.19.1
1nnj_A_142 - HH => SUBCLASS : 4.25.1
1nnj_A_37 - HE => SUBCLASS : 3.8.1
1nnj_A_37 - HE => SUBCLASS : 3.13.2
1nnj_A_92 - HA => SUBCLASS : 2.2.2
1nnj_A_49 - HA => SUBCLASS : 2.3.1
1nnj_A_58 - HA => SUBCLASS : 3.5.1

Loops in ArchDB-EC clusters

1nnj_A_142 - HH => SUBCLASS : 4.9.2

Loops not clustered in ArchDB

1nnj_A_102 - AR
1nnj_A_78 - AR
1nnj_A_67 - AR
1nnj_A_78 - AR
1nnj_A_24 - EH
1nnj_A_92 - HA
1nnj_A_58 - HA
1nnj_A_49 - HA
1nnj_A_253 - HA
1nnj_A_253 - HA
1nnj_A_194 - HE
1nnj_A_3 - HE
1nnj_A_171 - HH
1nnj_A_156 - HH
1nnj_A_122 - HH

1kfv A - percentage of sequence identity: 100
1kfv B - percentage of sequence identity: 100
1pji A - percentage of sequence identity: 100
1pjj A - percentage of sequence identity: 100
1pm5 A - percentage of sequence identity: 100
1tdz A - percentage of sequence identity: 100
1xc8 A - percentage of sequence identity: 100