PDB: 1olz Compound: semaphorin 4d Classification: DEVELOPMENTAL PROTEIN Entry date in PDB: 2003-09-11 Resolution [Å]: 2.00 R-Factor: 0.206

CHAIN: A SWISS-PROT/TREMBL: Q92854    KEYWORD: Developmental protein    Glycoprotein    Immunoglobulin domain    Multigene family    Neurogenesis    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Semaphorin 4d Ig-like domain    Human (Homo sapiens) SCOP: b.69.12.1 All beta proteins    7-bladed beta-propeller    Sema domain    Sema domain    Semaphorin 4d    Human (Homo sapiens) SCOP: g.16.2.1 Small proteins    Trefoil/Plexin domain-like    Plexin repeat    Plexin repeat    Semaphorin 4d    Human (Homo sapiens) GO:  membrane    receptor activity    development    CHAIN: B SWISS-PROT/TREMBL: Q92854    KEYWORD: Developmental protein    Glycoprotein    Immunoglobulin domain    Multigene family    Neurogenesis    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Semaphorin 4d Ig-like domain    Human (Homo sapiens) SCOP: b.69.12.1 All beta proteins    7-bladed beta-propeller    Sema domain    Sema domain    Semaphorin 4d    Human (Homo sapiens) SCOP: g.16.2.1 Small proteins    Trefoil/Plexin domain-like    Plexin repeat    Plexin repeat    Semaphorin 4d    Human (Homo sapiens) GO:  membrane    receptor activity    development

Image Source: PDB

Loops in ArchDB40 clusters

1olz_A_309 - HE => SUBCLASS : 3.7.2
1olz_A_309 - HE => SUBCLASS : 3.7.5
1olz_A_488 - HE => SUBCLASS : 4.9.1
1olz_A_488 - HE => SUBCLASS : 4.9.2
1olz_A_465 - HA => SUBCLASS : 2.2.2
1olz_A_48 - HA => SUBCLASS : 2.2.9
1olz_A_40 - HA => SUBCLASS : 2.6.1
1olz_A_414 - HA => SUBCLASS : 3.1.1
1olz_A_113 - HA => SUBCLASS : 4.1.1
1olz_A_499 - HA => SUBCLASS : 4.1.1
1olz_A_261 - HA => SUBCLASS : 4.1.12
1olz_A_399 - HA => SUBCLASS : 4.4.1
1olz_A_399 - HA => SUBCLASS : 5.1.5
1olz_A_31 - HA => SUBCLASS : 5.2.1
1olz_A_271 - HA => SUBCLASS : 7.2.1
1olz_A_539 - AR => SUBCLASS : 3.3.10
1olz_A_9 - AR => SUBCLASS : 6.21.1
1olz_A_588 - AR => SUBCLASS : 8.1.1

Loops in ArchDB95 clusters

1olz_A_392 - AR => SUBCLASS : 1.1.10
1olz_A_267 - AR => SUBCLASS : 2.1.4
1olz_A_392 - AR => SUBCLASS : 4.1.1
1olz_A_539 - AR => SUBCLASS : 4.1.1
1olz_A_9 - AR => SUBCLASS : 6.31.1
1olz_A_588 - AR => SUBCLASS : 8.2.1
1olz_A_367 - HE => SUBCLASS : 2.3.23
1olz_A_309 - HE => SUBCLASS : 3.14.1
1olz_A_488 - HE => SUBCLASS : 4.7.2
1olz_A_488 - HE => SUBCLASS : 4.7.3
1olz_A_465 - HA => SUBCLASS : 2.2.2
1olz_A_48 - HA => SUBCLASS : 2.2.27
1olz_A_40 - HA => SUBCLASS : 2.4.1
1olz_A_414 - HA => SUBCLASS : 3.1.1
1olz_A_399 - HA => SUBCLASS : 3.1.1
1olz_A_113 - HA => SUBCLASS : 4.1.1
1olz_A_499 - HA => SUBCLASS : 4.1.1
1olz_A_261 - HA => SUBCLASS : 4.1.7
1olz_A_91 - HA => SUBCLASS : 4.2.1
1olz_A_271 - HA => SUBCLASS : 4.4.2
1olz_A_399 - HA => SUBCLASS : 5.1.4
1olz_A_31 - HA => SUBCLASS : 5.2.1
1olz_A_271 - HA => SUBCLASS : 6.6.1

Loops not clustered in ArchDB

1olz_A_19 - AR
1olz_A_563 - AR
1olz_A_551 - AR
1olz_A_507 - AR
1olz_A_437 - AR
1olz_A_378 - AR
1olz_A_254 - AR
1olz_A_129 - AR
1olz_A_123 - AR
1olz_A_165 - AR
1olz_A_56 - EH
1olz_A_301 - EH
1olz_A_333 - EH
1olz_A_474 - EH
1olz_A_599 - HA
1olz_A_101 - HA
1olz_A_189 - HA
1olz_A_454 - HA
1olz_A_209 - HA
1olz_A_228 - HA
1olz_A_287 - HA
1olz_A_322 - HA
1olz_A_151 - HA
1olz_A_426 - HA
1olz_A_143 - HA
1olz_A_70 - HE
1olz_A_352 - HH

1olz A - percentage of sequence identity: 100
1olz B - percentage of sequence identity: 100