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Information on 1ot8
PDB: 1ot8
Compound: neurogenic locus notch protein
Classification: SIGNALING PROTEIN
Entry date in PDB: 2003-10-28
Resolution [Å]: 2.00
R-Factor: 0.179


CHAIN: A
SWISS-PROT/TREMBL: P07207
   KEYWORD: Activator    ANK repeat    Developmental protein    Differentiation    EGF-like domain    Glycoprotein    Neurogenesis    Nuclear protein    Oogenesis    Receptor    Repeat    Signal    Transcription regulation    Transmembrane   
SCOP: d.211.1.1 Alpha and beta proteins (a+b)    beta-hairpin-alpha-hairpin repeat    Ankyrin repeat    Ankyrin repeat    Neurogenic locus notch receptor domain    Fruit fly (Drosophila melanogaster)
GO:  integral to membrane    membrane    calcium ion binding    cell differentiation    development    Notch signaling pathway    regulation of development   


CHAIN: B
SWISS-PROT/TREMBL: P07207
   KEYWORD: Activator    ANK repeat    Developmental protein    Differentiation    EGF-like domain    Glycoprotein    Neurogenesis    Nuclear protein    Oogenesis    Receptor    Repeat    Signal    Transcription regulation    Transmembrane   
SCOP: d.211.1.1 Alpha and beta proteins (a+b)    beta-hairpin-alpha-hairpin repeat    Ankyrin repeat    Ankyrin repeat    Neurogenic locus notch receptor domain    Fruit fly (Drosophila melanogaster)
GO:  integral to membrane    membrane    calcium ion binding    cell differentiation    development    Notch signaling pathway    regulation of development   


CHAIN: C
SWISS-PROT/TREMBL: P07207
   KEYWORD: Activator    ANK repeat    Developmental protein    Differentiation    EGF-like domain    Glycoprotein    Neurogenesis    Nuclear protein    Oogenesis    Receptor    Repeat    Signal    Transcription regulation    Transmembrane   
SCOP: d.211.1.1 Alpha and beta proteins (a+b)    beta-hairpin-alpha-hairpin repeat    Ankyrin repeat    Ankyrin repeat    Neurogenic locus notch receptor domain    Fruit fly (Drosophila melanogaster)
GO:  integral to membrane    membrane    calcium ion binding    cell differentiation    development    Notch signaling pathway    regulation of development   
1ot8 Image
Image Source: PDB

Stored Loops of 1ot8

Loops in ArchDB40 clusters

1ot8_A_54 - HH => SUBCLASS : 2.2.1
1ot8_A_154 - HH => SUBCLASS : 2.2.1
1ot8_A_187 - HH => SUBCLASS : 2.2.1
1ot8_A_220 - HH => SUBCLASS : 2.2.1
1ot8_A_87 - HH => SUBCLASS : 2.2.4
1ot8_A_87 - HH => SUBCLASS : 2.2.5
1ot8_A_121 - HH => SUBCLASS : 4.38.1
1ot8_A_64 - HH => SUBCLASS : 13.1.1
1ot8_A_164 - HH => SUBCLASS : 13.1.1
1ot8_A_197 - HH => SUBCLASS : 13.1.1
1ot8_A_133 - HH => SUBCLASS : 13.1.1

Loops in ArchDB95 clusters

1ot8_A_154 - HH => SUBCLASS : 2.2.1
1ot8_A_54 - HH => SUBCLASS : 2.2.1
1ot8_A_187 - HH => SUBCLASS : 2.2.1
1ot8_A_220 - HH => SUBCLASS : 2.2.1
1ot8_A_87 - HH => SUBCLASS : 2.2.3
1ot8_A_30 - HH => SUBCLASS : 3.4.1
1ot8_A_121 - HH => SUBCLASS : 4.50.1
1ot8_A_164 - HH => SUBCLASS : 13.1.1
1ot8_A_64 - HH => SUBCLASS : 13.1.1
1ot8_A_197 - HH => SUBCLASS : 13.1.1
1ot8_A_133 - HH => SUBCLASS : 13.1.1

Loops not clustered in ArchDB

1ot8_A_97 - HH

Homologous structures to 1ot8 classified in ArchDB

1ot8 A - percentage of sequence identity: 100
1ot8 B - percentage of sequence identity: 100
1ot8 C - percentage of sequence identity: 100
1ymp A - percentage of sequence identity: 75
1ymp B - percentage of sequence identity: 75
1yyh A - percentage of sequence identity: 71
1yyh B - percentage of sequence identity: 71