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Information on 1oy3
PDB: 1oy3
Compound: transcription factor p65
Classification: DNA BINDING PROTEIN
Entry date in PDB: 2003-05-20
Resolution [Å]: 2.05
R-Factor: 0.218


CHAIN: B
SWISS-PROT/TREMBL: Q04207
   KEYWORD: 3D-structure    Activator    Alternative splicing    DNA-binding    Nuclear protein    Phosphorylation    Transcription regulation   
SCOP: b.1.18.1 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain    p65 subunit of NF-kappa B (NFKB), dimerization domain    Mouse (Mus musculus)
GO:  nucleus    transcription factor activity    regulation of transcription    regulation of transcription, DNA-dependent   


CHAIN: C
SWISS-PROT/TREMBL: Q04207
   KEYWORD: 3D-structure    Activator    Alternative splicing    DNA-binding    Nuclear protein    Phosphorylation    Transcription regulation   
SCOP: b.1.18.1 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain    p65 subunit of NF-kappa B (NFKB), dimerization domain    Mouse (Mus musculus)
GO:  nucleus    transcription factor activity    regulation of transcription    regulation of transcription, DNA-dependent   


CHAIN: D
SWISS-PROT/TREMBL: Q60778
   KEYWORD: 3D-structure    ANK repeat    Nuclear protein    Phosphorylation    Repeat   
SCOP: d.211.1.1 Alpha and beta proteins (a+b)    beta-hairpin-alpha-hairpin repeat    Ankyrin repeat    Ankyrin repeat    Transcription factor inhibitor I-kappa-B-beta, IKBB    Mouse (Mus musculus)
GO:  
1oy3 Image
Image Source: PDB

Stored Loops of 1oy3

Loops in ArchDB40 clusters

1oy3_D_210 - HH => SUBCLASS : 2.2.1
1oy3_D_61 - HH => SUBCLASS : 2.2.1
1oy3_D_244 - HH => SUBCLASS : 2.2.1
1oy3_D_97 - HH => SUBCLASS : 2.2.1
1oy3_D_130 - HH => SUBCLASS : 2.4.5
1oy3_D_277 - HH => SUBCLASS : 3.4.2
1oy3_D_254 - HH => SUBCLASS : 13.1.1
1oy3_D_107 - HH => SUBCLASS : 13.1.1
1oy3_D_220 - HH => SUBCLASS : 14.2.1

Loops in ArchDB95 clusters

1oy3_C_196 - AR => SUBCLASS : 3.4.2
1oy3_D_244 - HH => SUBCLASS : 2.2.1
1oy3_D_210 - HH => SUBCLASS : 2.2.1
1oy3_D_61 - HH => SUBCLASS : 2.2.1
1oy3_D_97 - HH => SUBCLASS : 2.2.1
1oy3_D_130 - HH => SUBCLASS : 2.2.8
1oy3_D_130 - HH => SUBCLASS : 2.5.7
1oy3_D_277 - HH => SUBCLASS : 3.3.2
1oy3_D_107 - HH => SUBCLASS : 13.1.1
1oy3_D_254 - HH => SUBCLASS : 13.1.1
1oy3_D_220 - HH => SUBCLASS : 14.8.1

Loops not clustered in ArchDB

1oy3_C_233 - AR
1oy3_C_203 - AR
1oy3_C_211 - AR
1oy3_C_279 - AR
1oy3_C_249 - AR
1oy3_C_284 - EH
1oy3_C_225 - HA
1oy3_C_266 - HA
1oy3_D_71 - HH
1oy3_D_140 - HH
1oy3_C_294 - HH

Homologous structures to 1oy3 classified in ArchDB

1k3z B - percentage of sequence identity: 100
1k3z D - percentage of sequence identity: 98
1my7 A - percentage of sequence identity: 99