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Information on 1p4d
PDB: 1p4d
Compound: trai protein
Classification: HYDROLASE
Entry date in PDB: 2003-10-14
Resolution [Å]: 2.60
R-Factor: 0.233


CHAIN: A
SWISS-PROT/TREMBL: P14565
   KEYWORD: Alternative initiation    ATP-binding    Complete proteome    Conjugation    DNA-binding    Helicase    Hydrolase    Plasmid   
EC: 3.6.1.-
SCOP: d.89.1.5 Alpha and beta proteins (a+b)    Origin of replication-binding domain, RBD-like    Origin of replication-binding domain, RBD-like    Relaxase domain    F factor TraI relaxase    Escherichia coli
GO:  ATP binding    DNA binding    DNA helicase activity    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    conjugation   


CHAIN: B
SWISS-PROT/TREMBL: P14565
   KEYWORD: Alternative initiation    ATP-binding    Complete proteome    Conjugation    DNA-binding    Helicase    Hydrolase    Plasmid   
EC: 3.6.1.-
SCOP: d.89.1.5 Alpha and beta proteins (a+b)    Origin of replication-binding domain, RBD-like    Origin of replication-binding domain, RBD-like    Relaxase domain    F factor TraI relaxase    Escherichia coli
GO:  ATP binding    DNA binding    DNA helicase activity    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    conjugation   


CHAIN: C
SWISS-PROT/TREMBL: P14565
   KEYWORD: Alternative initiation    ATP-binding    Complete proteome    Conjugation    DNA-binding    Helicase    Hydrolase    Plasmid   
EC: 3.6.1.-
SCOP: d.89.1.5 Alpha and beta proteins (a+b)    Origin of replication-binding domain, RBD-like    Origin of replication-binding domain, RBD-like    Relaxase domain    F factor TraI relaxase    Escherichia coli
GO:  ATP binding    DNA binding    DNA helicase activity    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    conjugation   
1p4d Image
Image Source: PDB

Stored Loops of 1p4d

Loops in ArchDB-EC clusters

1p4d_A_88 - HH => SUBCLASS : 2.2.11

Loops not clustered in ArchDB

1p4d_A_154 - AR
1p4d_A_73 - AR
1p4d_A_130 - AR
1p4d_A_2 - EH
1p4d_A_224 - EH
1p4d_A_171 - EH
1p4d_A_79 - EH
1p4d_A_32 - EH
1p4d_A_166 - HA
1p4d_A_141 - HA
1p4d_A_122 - HA
1p4d_A_69 - HA
1p4d_A_216 - HA
1p4d_A_193 - HE
1p4d_A_101 - HE
1p4d_A_49 - HE
1p4d_A_10 - HE
1p4d_A_270 - HH
1p4d_A_36 - HH
1p4d_A_185 - HH

Homologous structures to 1p4d classified in ArchDB

1p4d A - percentage of sequence identity: 100
1p4d B - percentage of sequence identity: 100
1p4d C - percentage of sequence identity: 100
2a0i A - percentage of sequence identity: 99