PDB: 1pb7 Compound: n-methyl-d-aspartate receptor subunit 1 Classification: LIGAND BINDING PROTEIN Entry date in PDB: 2003-06-24 Resolution [Å]: 1.35 R-Factor: 0.194

CHAIN: A SWISS-PROT/TREMBL: P35439    KEYWORD: 3D-structure    Alternative splicing    Calcium    Ionic channel    Magnesium    Phosphorylation    Postsynaptic membrane    Receptor    Signal    Transmembrane    SCOP: c.94.1.1 Alpha and beta proteins (a/b)    Periplasmic binding protein-like II    Periplasmic binding protein-like II    Phosphate binding protein-like    N-methyl-D-aspartate receptor subunit 1    Rat (Rattus norvegicus) GO:  membrane    glutamate-gated ion channel activity    ion channel activity    ionotropic glutamate receptor activity    potassium channel activity    receptor activity    transporter activity    ion transport    potassium ion transport    transport

Image Source: PDB

Loops in ArchDB40 clusters

1pb7_A_66 - HE => SUBCLASS : 1.1.2
1pb7_A_225 - HE => SUBCLASS : 3.4.1
1pb7_A_108 - HE => SUBCLASS : 4.2.1
1pb7_A_206 - HE => SUBCLASS : 4.2.1
1pb7_A_220 - EH => SUBCLASS : 0.1.7
1pb7_A_253 - EH => SUBCLASS : 3.10.4
1pb7_A_180 - HH => SUBCLASS : 1.1.6
1pb7_A_180 - HH => SUBCLASS : 1.1.12
1pb7_A_180 - HH => SUBCLASS : 1.2.27
1pb7_A_261 - HH => SUBCLASS : 1.3.1

Loops in ArchDB95 clusters

1pb7_A_220 - EH => SUBCLASS : 0.1.4
1pb7_A_253 - EH => SUBCLASS : 3.16.3
1pb7_A_135 - AR => SUBCLASS : 3.8.4
1pb7_A_180 - HH => SUBCLASS : 1.1.13
1pb7_A_180 - HH => SUBCLASS : 1.1.17
1pb7_A_180 - HH => SUBCLASS : 1.1.48
1pb7_A_261 - HH => SUBCLASS : 1.3.1
1pb7_A_66 - HE => SUBCLASS : 3.2.1
1pb7_A_66 - HE => SUBCLASS : 3.2.2
1pb7_A_225 - HE => SUBCLASS : 3.4.1
1pb7_A_108 - HE => SUBCLASS : 4.2.1
1pb7_A_206 - HE => SUBCLASS : 4.2.1

Loops not clustered in ArchDB

1pb7_A_6 - AR
1pb7_A_18 - AR
1pb7_A_82 - AR
1pb7_A_238 - AR
1pb7_A_246 - AR
1pb7_A_173 - EH
1pb7_A_142 - EH
1pb7_A_120 - EH
1pb7_A_104 - EH
1pb7_A_58 - EH
1pb7_A_95 - HA
1pb7_A_42 - HA
1pb7_A_129 - HE
1pb7_A_162 - HE
1pb7_A_192 - HH

1pb8 A - percentage of sequence identity: 99
1pb9 A - percentage of sequence identity: 99
1pbq A - percentage of sequence identity: 100
1pbq B - percentage of sequence identity: 100
1y1m A - percentage of sequence identity: 100
1y1m B - percentage of sequence identity: 100
1y1z A - percentage of sequence identity: 100
1y20 A - percentage of sequence identity: 100
2a5t A - percentage of sequence identity: 100