PDB: 1qqp Compound: genome polyprotein Classification: VIRUS/VIRAL PROTEIN Entry date in PDB: 1999-06-18 Resolution [Å]: 1.90 R-Factor: 0.161

CHAIN: 1 SWISS-PROT/TREMBL: P03305    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Aphthovirus (Foot-and-mouth disease virus) coat proteins    FMDV (Foot-and-mouth disease virus), strain bfs, 1860 GO:  viral capsid    structural molecule activity    CHAIN: 2 SWISS-PROT/TREMBL: P03305    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Aphthovirus (Foot-and-mouth disease virus) coat proteins    FMDV (Foot-and-mouth disease virus), strain bfs, 1860 GO:  viral capsid    structural molecule activity    CHAIN: 3 SWISS-PROT/TREMBL: P03305    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Aphthovirus (Foot-and-mouth disease virus) coat proteins    FMDV (Foot-and-mouth disease virus), strain bfs, 1860 GO:  viral capsid    structural molecule activity

Image Source: PDB

Loops in ArchDB40 clusters

1qqp_3_90 - HE => SUBCLASS : 0.1.44
1qqp_1_61 - HE => SUBCLASS : 0.1.49
1qqp_2_90 - HE => SUBCLASS : 0.1.49
1qqp_3_44 - HE => SUBCLASS : 2.6.1
1qqp_2_15 - HA => SUBCLASS : 2.3.1
1qqp_3_98 - AR => SUBCLASS : 2.3.1
1qqp_3_198 - AR => SUBCLASS : 4.3.2
1qqp_3_198 - AR => SUBCLASS : 5.5.2
1qqp_3_63 - AR => SUBCLASS : 5.34.1
1qqp_3_154 - AR => SUBCLASS : 7.12.1

Loops in ArchDB95 clusters

1qqp_3_118 - EH => SUBCLASS : 9.31.1
1qqp_3_98 - AR => SUBCLASS : 2.7.1
1qqp_3_63 - AR => SUBCLASS : 3.9.3
1qqp_3_198 - AR => SUBCLASS : 3.11.1
1qqp_3_198 - AR => SUBCLASS : 4.6.3
1qqp_3_143 - AR => SUBCLASS : 5.69.1
1qqp_3_44 - HE => SUBCLASS : 0.1.5
1qqp_3_136 - HE => SUBCLASS : 0.1.46
1qqp_3_90 - HE => SUBCLASS : 0.1.49
1qqp_2_90 - HE => SUBCLASS : 0.1.69
1qqp_1_61 - HE => SUBCLASS : 0.1.69
1qqp_2_15 - HA => SUBCLASS : 2.3.1

Loops not clustered in ArchDB

1qqp_1_39 - AR
1qqp_2_22 - AR
1qqp_2_33 - AR
1qqp_2_53 - AR
1qqp_2_62 - AR
1qqp_2_97 - AR
1qqp_2_145 - AR
1qqp_2_155 - AR
1qqp_2_177 - AR
1qqp_3_183 - AR
1qqp_3_168 - AR
1qqp_1_69 - AR
1qqp_1_105 - AR
1qqp_1_113 - AR
1qqp_1_126 - AR
1qqp_1_167 - AR
1qqp_3_53 - AR
1qqp_3_105 - AR
1qqp_2_78 - EH
1qqp_3_73 - EH
1qqp_1_49 - EH
1qqp_1_86 - HA
1qqp_2_118 - HA
1qqp_1_32 - HE
1qqp_4_28 - HH

1bbt 3 - percentage of sequence identity: 100
1fmd 3 - percentage of sequence identity: 84
1fod 3 - percentage of sequence identity: 100
1qgc 3 - percentage of sequence identity: 84
1zba 3 - percentage of sequence identity: 81
1zbe 3 - percentage of sequence identity: 81
null nu - percentage of sequence identity: 0