PDB: 1qz1 Compound: neural cell adhesion molecule 1, 140 kda isoform Classification: CELL ADHESION Entry date in PDB: 2003-11-04 Resolution [Å]: 2.00 R-Factor: 0.218

CHAIN: A SWISS-PROT/TREMBL: P13596    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) GO:  membrane    cell adhesion

Image Source: PDB

Loops in ArchDB40 clusters

1qz1_A_73 - HA => SUBCLASS : 4.2.2
1qz1_A_245 - HA => SUBCLASS : 5.2.1
1qz1_A_73 - HA => SUBCLASS : 5.3.8
1qz1_A_108 - AR => SUBCLASS : 4.1.1
1qz1_A_253 - AR => SUBCLASS : 8.1.1

Loops in ArchDB95 clusters

1qz1_A_108 - AR => SUBCLASS : 1.1.2
1qz1_A_108 - AR => SUBCLASS : 4.1.1
1qz1_A_253 - AR => SUBCLASS : 8.2.1
1qz1_A_73 - HA => SUBCLASS : 5.1.2
1qz1_A_73 - HA => SUBCLASS : 5.1.3
1qz1_A_73 - HA => SUBCLASS : 5.1.8
1qz1_A_245 - HA => SUBCLASS : 5.2.1

Loops not clustered in ArchDB

1qz1_A_3 - AR
1qz1_A_233 - AR
1qz1_A_212 - AR
1qz1_A_201 - AR
1qz1_A_179 - AR
1qz1_A_155 - AR
1qz1_A_129 - AR
1qz1_A_121 - AR
1qz1_A_116 - AR
1qz1_A_100 - AR
1qz1_A_86 - AR
1qz1_A_10 - AR
1qz1_A_59 - AR
1qz1_A_18 - AR
1qz1_A_32 - AR
1qz1_A_225 - HA
1qz1_A_50 - HA
1qz1_A_166 - HA
1qz1_A_147 - HA
1qz1_A_265 - HA

1epf B - percentage of sequence identity: 100
1epf C - percentage of sequence identity: 100
1epf D - percentage of sequence identity: 100
1ie5 A - percentage of sequence identity: 78
2ncm - - percentage of sequence identity: 100
3ncm A - percentage of sequence identity: 98