PDB: 1rkd Compound: ribokinase Classification: CARBOHYDRATE KINASE Entry date in PDB: 1998-03-04 Resolution [Å]: 1.84 R-Factor: 0.221

CHAIN: - SWISS-PROT/TREMBL: P05054    KEYWORD: 3D-structure    Carbohydrate metabolism    Complete proteome    Kinase    Transferase    EC: 2.7.1.15 SCOP: c.72.1.1 Alpha and beta proteins (a/b)    Ribokinase-like    Ribokinase-like    Ribokinase-like    Ribokinase    Escherichia coli GO:  ribokinase activity    ribokinase activity    D-ribose metabolism    D-ribose metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1rkd_*_146 - HE => SUBCLASS : 1.1.1
1rkd_*_70 - HE => SUBCLASS : 1.1.3
1rkd_*_129 - HE => SUBCLASS : 2.3.1
1rkd_*_175 - HE => SUBCLASS : 2.3.7
1rkd_*_202 - HE => SUBCLASS : 3.1.1
1rkd_*_96 - HA => SUBCLASS : 3.1.1
1rkd_*_219 - HA => SUBCLASS : 5.30.1
1rkd_*_183 - EH => SUBCLASS : 2.2.2
1rkd_*_137 - EH => SUBCLASS : 4.2.2
1rkd_*_137 - EH => SUBCLASS : 5.1.3
1rkd_*_82 - AR => SUBCLASS : 3.4.1
1rkd_*_82 - AR => SUBCLASS : 3.4.3
1rkd_*_6 - AR => SUBCLASS : 3.18.1
1rkd_*_87 - AR => SUBCLASS : 5.13.1
1rkd_*_253 - HH => SUBCLASS : 3.3.1
1rkd_*_188 - HH => SUBCLASS : 6.23.1
1rkd_*_188 - HH => SUBCLASS : 6.26.1

Loops in ArchDB95 clusters

1rkd_*_183 - EH => SUBCLASS : 2.2.3
1rkd_*_137 - EH => SUBCLASS : 4.2.1
1rkd_*_137 - EH => SUBCLASS : 5.1.2
1rkd_*_82 - AR => SUBCLASS : 3.2.3
1rkd_*_82 - AR => SUBCLASS : 3.2.6
1rkd_*_6 - AR => SUBCLASS : 3.18.1
1rkd_*_253 - HH => SUBCLASS : 3.2.1
1rkd_*_188 - HH => SUBCLASS : 6.53.1
1rkd_*_188 - HH => SUBCLASS : 6.56.1
1rkd_*_146 - HE => SUBCLASS : 1.1.1
1rkd_*_70 - HE => SUBCLASS : 1.1.2
1rkd_*_43 - HE => SUBCLASS : 1.1.6
1rkd_*_129 - HE => SUBCLASS : 2.2.1
1rkd_*_175 - HE => SUBCLASS : 2.2.11
1rkd_*_202 - HE => SUBCLASS : 3.1.1
1rkd_*_202 - HE => SUBCLASS : 3.1.4
1rkd_*_96 - HA => SUBCLASS : 3.1.1
1rkd_*_219 - HA => SUBCLASS : 5.34.1

Loops in ArchDB-EC clusters

1rkd_*_253 - HH => SUBCLASS : 3.2.1

Loops in ArchDB-KI clusters

1rkd_*_36 - EH => SUBCLASS : 1.2.1
1rkd_*_96 - HA => SUBCLASS : 4.1.1
1rkd_*_146 - HE => SUBCLASS : 1.1.1
1rkd_*_70 - HE => SUBCLASS : 1.1.3
1rkd_*_129 - HE => SUBCLASS : 2.2.4
1rkd_*_253 - HH => SUBCLASS : 4.5.1

Loops not clustered in ArchDB

1rkd_*_6 - AR
1rkd_*_82 - AR
1rkd_*_87 - AR
1rkd_*_36 - EH
1rkd_*_236 - EH
1rkd_*_162 - EH
1rkd_*_108 - EH
1rkd_*_57 - EH
1rkd_*_96 - HA
1rkd_*_219 - HA
1rkd_*_14 - HA
1rkd_*_229 - HA
1rkd_*_14 - HA
1rkd_*_229 - HA
1rkd_*_271 - HH
1rkd_*_122 - HH

Loops not clustered in ArchDB-KI

1rkd_*_82 - AR
1rkd_*_87 - AR
1rkd_*_6 - AR
1rkd_*_162 - EH
1rkd_*_108 - EH
1rkd_*_236 - EH
1rkd_*_183 - EH
1rkd_*_137 - EH
1rkd_*_57 - EH
1rkd_*_219 - HA
1rkd_*_14 - HA
1rkd_*_229 - HA
1rkd_*_175 - HE
1rkd_*_43 - HE
1rkd_*_202 - HE
1rkd_*_122 - HH
1rkd_*_271 - HH
1rkd_*_188 - HH

1gqt A - percentage of sequence identity: 100
1gqt B - percentage of sequence identity: 100
1gqt C - percentage of sequence identity: 100
1gqt D - percentage of sequence identity: 100
1rk2 A - percentage of sequence identity: 100
1rk2 B - percentage of sequence identity: 100
1rk2 C - percentage of sequence identity: 100
1rk2 D - percentage of sequence identity: 100
1rka A - percentage of sequence identity: 100
1rks A - percentage of sequence identity: 100