PDB: 1rxw Compound: flap structure-specific endonuclease Classification: HYDROLASE/DNA Entry date in PDB: 2004-01-27 Resolution [Å]: 2.00 R-Factor: 0.242

CHAIN: A SWISS-PROT/TREMBL: O29975    KEYWORD: Complete proteome    Endonuclease    Hydrolase    Magnesium    Metal-binding    Nuclease    EC: 3.-.-.- SCOP: a.60.7.1 All alpha proteins    SAM domain-like    5' to 3' exonuclease, C-terminal subdomain    5' to 3' exonuclease, C-terminal subdomain    Flap endonuclease-1 (Fen-1 nuclease)    Archaeon Archaeoglobus fulgidus SCOP: c.120.1.2 Alpha and beta proteins (a/b)    PIN domain-like    PIN domain-like    5' to 3' exonuclease catalytic domain    Flap endonuclease-1 (Fen-1 nuclease)    Archaeon Archaeoglobus fulgidus GO:  DNA binding    nuclease activity    DNA repair

Image Source: PDB

Loops in ArchDB40 clusters

1rxw_A_56 - HE => SUBCLASS : 1.1.1
1rxw_A_128 - HE => SUBCLASS : 2.1.1
1rxw_A_152 - HE => SUBCLASS : 4.2.6
1rxw_A_167 - EH => SUBCLASS : 2.1.17
1rxw_A_88 - HH => SUBCLASS : 2.2.4
1rxw_A_211 - HH => SUBCLASS : 3.1.2
1rxw_A_297 - HH => SUBCLASS : 3.2.18
1rxw_A_297 - HH => SUBCLASS : 3.2.22
1rxw_A_116 - HH => SUBCLASS : 4.9.1

Loops in ArchDB95 clusters

1rxw_A_167 - EH => SUBCLASS : 2.3.9
1rxw_A_167 - EH => SUBCLASS : 2.3.10
1rxw_A_145 - EH => SUBCLASS : 3.4.1
1rxw_A_12 - AR => SUBCLASS : 8.29.1
1rxw_A_88 - HH => SUBCLASS : 2.2.10
1rxw_A_297 - HH => SUBCLASS : 3.1.13
1rxw_A_297 - HH => SUBCLASS : 3.2.1
1rxw_A_211 - HH => SUBCLASS : 3.4.1
1rxw_A_116 - HH => SUBCLASS : 4.7.1
1rxw_A_28 - HH => SUBCLASS : 16.7.1
1rxw_A_56 - HE => SUBCLASS : 1.1.1
1rxw_A_128 - HE => SUBCLASS : 2.1.1
1rxw_A_152 - HE => SUBCLASS : 4.4.3

Loops not clustered in ArchDB

1rxw_A_23 - EH
1rxw_A_74 - EH
1rxw_A_207 - EH
1rxw_A_182 - HA
1rxw_A_174 - HE
1rxw_A_222 - HH
1rxw_A_245 - HH
1rxw_A_258 - HH
1rxw_A_273 - HH

1b43 B - percentage of sequence identity: 61
1rxv A - percentage of sequence identity: 100
1rxv B - percentage of sequence identity: 100