PDB: 1sdj Compound: hypothetical protein ydde Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION Entry date in PDB: 2004-02-24 Resolution [Å]: 2.30 R-Factor: 0.218

CHAIN: A SWISS-PROT/TREMBL: P37757    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Oxidoreductase    SCOP: d.21.1.2 Alpha and beta proteins (a+b)    Diaminopimelate epimerase-like    Diaminopimelate epimerase-like    PhzC/PhzF-like    Hypothetical protein YddE    Escherichia coli SCOP: d.21.1.2 Alpha and beta proteins (a+b)    Diaminopimelate epimerase-like    Diaminopimelate epimerase-like    PhzC/PhzF-like    Hypothetical protein YddE    Escherichia coli GO:  catalytic activity    biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1sdj_A_101 - HA => SUBCLASS : 2.1.1
1sdj_A_58 - HA => SUBCLASS : 3.11.1
1sdj_A_47 - HA => SUBCLASS : 7.2.1

Loops in ArchDB95 clusters

1sdj_A_101 - HA => SUBCLASS : 2.1.1
1sdj_A_58 - HA => SUBCLASS : 2.2.11
1sdj_A_92 - HA => SUBCLASS : 2.2.51
1sdj_A_58 - HA => SUBCLASS : 3.9.2
1sdj_A_47 - HA => SUBCLASS : 6.6.1

Loops not clustered in ArchDB

1sdj_A_113 - AR
1sdj_A_275 - AR
1sdj_A_124 - EH
1sdj_A_207 - EH
1sdj_A_157 - EH
1sdj_A_19 - EH
1sdj_A_68 - EH
1sdj_A_4 - HA
1sdj_A_266 - HA
1sdj_A_248 - HA
1sdj_A_199 - HA
1sdj_A_37 - HE
1sdj_A_73 - HE
1sdj_A_131 - HE
1sdj_A_181 - HE
1sdj_A_234 - HE
1sdj_A_226 - HH

1qy9 A - percentage of sequence identity: 100
1qy9 B - percentage of sequence identity: 100
1qy9 C - percentage of sequence identity: 100
1qy9 D - percentage of sequence identity: 100
1qya A - percentage of sequence identity: 98
1qya B - percentage of sequence identity: 98