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Information on 1svp
PDB: 1svp
Compound: sindbis virus capsid protein
Classification: VIRUS CAPSID PROTEIN
Entry date in PDB: 1996-08-17
Resolution [Å]: 2.00
R-Factor: 0.184


CHAIN: A
SWISS-PROT/TREMBL: P03316
   KEYWORD: 3D-structure    Coat protein    Glycoprotein    Hydrolase    Polyprotein    Serine protease    Transmembrane   
EC: 3.4.21.-
SCOP: b.47.1.3 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral proteases    Viral capsid protein    Sindbis virus
GO:  membrane    viral capsid    serine-type endopeptidase activity    structural molecule activity    proteolysis and peptidolysis   


CHAIN: B
SWISS-PROT/TREMBL: P03316
   KEYWORD: 3D-structure    Coat protein    Glycoprotein    Hydrolase    Polyprotein    Serine protease    Transmembrane   
EC: 3.4.21.-
SCOP: b.47.1.3 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral proteases    Viral capsid protein    Sindbis virus
GO:  membrane    viral capsid    serine-type endopeptidase activity    structural molecule activity    proteolysis and peptidolysis   
1svp Image
Image Source: PDB

Stored Loops of 1svp

Loops in ArchDB40 clusters

1svp_A_125 - HA => SUBCLASS : 2.1.1
1svp_A_187 - HA => SUBCLASS : 2.2.2
1svp_A_157 - HA => SUBCLASS : 4.1.1
1svp_A_115 - HA => SUBCLASS : 4.2.2
1svp_A_218 - HA => SUBCLASS : 5.1.3
1svp_A_115 - HA => SUBCLASS : 5.1.3
1svp_A_239 - HA => SUBCLASS : 5.1.6
1svp_A_135 - AR => SUBCLASS : 5.17.2

Loops in ArchDB95 clusters

1svp_A_135 - AR => SUBCLASS : 5.60.1
1svp_A_125 - HA => SUBCLASS : 2.1.1
1svp_A_187 - HA => SUBCLASS : 2.2.2
1svp_A_115 - HA => SUBCLASS : 3.1.2
1svp_A_157 - HA => SUBCLASS : 4.1.1
1svp_A_115 - HA => SUBCLASS : 5.1.1
1svp_A_239 - HA => SUBCLASS : 5.1.1
1svp_A_218 - HA => SUBCLASS : 5.1.2
1svp_A_115 - HA => SUBCLASS : 5.1.2
1svp_A_239 - HA => SUBCLASS : 5.1.3

Loops in ArchDB-EC clusters

1svp_A_218 - HA => SUBCLASS : 5.1.3

Loops not clustered in ArchDB

1svp_A_145 - AR
1svp_A_202 - AR
1svp_A_164 - AR
1svp_A_145 - AR
1svp_A_135 - AR
1svp_A_202 - AR
1svp_A_164 - AR
1svp_A_115 - HA
1svp_A_226 - HA
1svp_A_218 - HA
1svp_A_194 - HA
1svp_A_187 - HA
1svp_A_194 - HA
1svp_A_157 - HA
1svp_A_226 - HA
1svp_A_125 - HA
1svp_A_239 - HA

Homologous structures to 1svp classified in ArchDB

1dyl A - percentage of sequence identity: 68
1dyl B - percentage of sequence identity: 68
1dyl C - percentage of sequence identity: 68
1dyl D - percentage of sequence identity: 68
1kxa - - percentage of sequence identity: 99
1kxb - - percentage of sequence identity: 100
1kxc - - percentage of sequence identity: 98
1kxd - - percentage of sequence identity: 98
1kxe - - percentage of sequence identity: 98
1kxf - - percentage of sequence identity: 99
1ld4 A - percentage of sequence identity: 99
1ld4 B - percentage of sequence identity: 99
1ld4 C - percentage of sequence identity: 99
1ld4 D - percentage of sequence identity: 99
1svp A - percentage of sequence identity: 100
1svp B - percentage of sequence identity: 100
1vcp A - percentage of sequence identity: 68
1vcp B - percentage of sequence identity: 68
1vcp C - percentage of sequence identity: 68
1vcq A - percentage of sequence identity: 68
1vcq B - percentage of sequence identity: 68
1wyk A - percentage of sequence identity: 99
1wyk B - percentage of sequence identity: 99
1wyk C - percentage of sequence identity: 99
1wyk D - percentage of sequence identity: 99
1z8y Q - percentage of sequence identity: 99
1z8y R - percentage of sequence identity: 99
1z8y S - percentage of sequence identity: 99
1z8y T - percentage of sequence identity: 99
2snv - - percentage of sequence identity: 99
2snw A - percentage of sequence identity: 99
2snw B - percentage of sequence identity: 99