PDB: 1vcp Compound: semliki forest virus capsid protein Classification: NUCLEOCAPSID PROTEIN Entry date in PDB: 1996-12-07 Resolution [Å]: 3.00 R-Factor: 0.157

CHAIN: A SWISS-PROT/TREMBL: P03315    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Hydrolase    Polyprotein    Serine protease    Transmembrane    EC: 3.4.21.- SCOP: b.47.1.3 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral proteases    Viral capsid protein    Semliki forest virus GO:  membrane    viral capsid    serine-type endopeptidase activity    structural molecule activity    proteolysis and peptidolysis    CHAIN: B SWISS-PROT/TREMBL: P03315    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Hydrolase    Polyprotein    Serine protease    Transmembrane    EC: 3.4.21.- SCOP: b.47.1.3 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral proteases    Viral capsid protein    Semliki forest virus GO:  membrane    viral capsid    serine-type endopeptidase activity    structural molecule activity    proteolysis and peptidolysis    CHAIN: C SWISS-PROT/TREMBL: P03315    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Hydrolase    Polyprotein    Serine protease    Transmembrane    EC: 3.4.21.- SCOP: b.47.1.3 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral proteases    Viral capsid protein    Semliki forest virus GO:  membrane    viral capsid    serine-type endopeptidase activity    structural molecule activity    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB-EC clusters

1vcp_A_153 - HE => SUBCLASS : 3.19.2

Loops not clustered in ArchDB

1vcp_A_256 - AR
1vcp_A_206 - AR
1vcp_A_128 - AR
1vcp_A_139 - AR
1vcp_A_168 - AR
1vcp_A_149 - EH
1vcp_A_161 - HA
1vcp_A_198 - HA
1vcp_A_120 - HA
1vcp_A_222 - HA
1vcp_A_230 - HA
1vcp_A_243 - HA
1vcp_A_191 - HA

1dyl A - percentage of sequence identity: 100
1dyl B - percentage of sequence identity: 100
1dyl C - percentage of sequence identity: 100
1dyl D - percentage of sequence identity: 100
1ep5 A - percentage of sequence identity: 65
1ep5 B - percentage of sequence identity: 65
1ep5 C - percentage of sequence identity: 65
1ep6 A - percentage of sequence identity: 65
1ep6 B - percentage of sequence identity: 65
1ep6 C - percentage of sequence identity: 65
1kxa - - percentage of sequence identity: 68
1kxb - - percentage of sequence identity: 68
1kxc - - percentage of sequence identity: 68
1kxd - - percentage of sequence identity: 68
1kxe - - percentage of sequence identity: 67
1kxf - - percentage of sequence identity: 68
1ld4 A - percentage of sequence identity: 68
1ld4 B - percentage of sequence identity: 68
1ld4 C - percentage of sequence identity: 68
1ld4 D - percentage of sequence identity: 68
1svp A - percentage of sequence identity: 68
1svp B - percentage of sequence identity: 68
1vcp A - percentage of sequence identity: 100
1vcp B - percentage of sequence identity: 100
1vcp C - percentage of sequence identity: 100
1vcq A - percentage of sequence identity: 100
1vcq B - percentage of sequence identity: 100
1wyk A - percentage of sequence identity: 68
1wyk B - percentage of sequence identity: 68
1wyk C - percentage of sequence identity: 68
1wyk D - percentage of sequence identity: 68
1z8y Q - percentage of sequence identity: 68
1z8y R - percentage of sequence identity: 68
1z8y S - percentage of sequence identity: 68
1z8y T - percentage of sequence identity: 68
2snv - - percentage of sequence identity: 68
2snw A - percentage of sequence identity: 68
2snw B - percentage of sequence identity: 68