PDB: 1vh8 Compound: 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synth Classification: LYASE Entry date in PDB: 2003-12-30 Resolution [Å]: 2.35 R-Factor: 0.240

CHAIN: A SWISS-PROT/TREMBL: P44815    KEYWORD: 3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    EC: 4.6.1.12 SCOP: d.79.5.1 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    Haemophilus influenzae GO:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    terpenoid biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P44815    KEYWORD: 3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    EC: 4.6.1.12 SCOP: d.79.5.1 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    Haemophilus influenzae GO:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    terpenoid biosynthesis    CHAIN: C SWISS-PROT/TREMBL: P44815    KEYWORD: 3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    EC: 4.6.1.12 SCOP: d.79.5.1 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    Haemophilus influenzae GO:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    terpenoid biosynthesis    CHAIN: D SWISS-PROT/TREMBL: P44815    KEYWORD: 3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    EC: 4.6.1.12 SCOP: d.79.5.1 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    Haemophilus influenzae GO:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    terpenoid biosynthesis    CHAIN: E SWISS-PROT/TREMBL: P44815    KEYWORD: 3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    EC: 4.6.1.12 SCOP: d.79.5.1 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    Haemophilus influenzae GO:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    terpenoid biosynthesis    CHAIN: F SWISS-PROT/TREMBL: P44815    KEYWORD: 3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    3D-structure    Complete proteome    Isoprene biosynthesis    Lyase    EC: 4.6.1.12 SCOP: d.79.5.1 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF    Haemophilus influenzae GO:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    terpenoid biosynthesis

Image Source: PDB

Loops in ArchDB95 clusters

1vh8_A_74 - HE => SUBCLASS : 1.1.3
1vh8_A_74 - HE => SUBCLASS : 1.1.6
1vh8_A_115 - HE => SUBCLASS : 6.1.1

Loops not clustered in ArchDB

1vh8_A_2 - AR
1vh8_A_24 - EH
1vh8_A_90 - EH
1vh8_A_128 - EH
1vh8_A_14 - HA
1vh8_A_139 - HE
1vh8_A_40 - HH

1gx1 A - percentage of sequence identity: 76
1gx1 B - percentage of sequence identity: 76
1gx1 C - percentage of sequence identity: 76
1h47 A - percentage of sequence identity: 76
1h47 B - percentage of sequence identity: 76
1h47 C - percentage of sequence identity: 76
1h47 D - percentage of sequence identity: 76
1h47 E - percentage of sequence identity: 76
1h47 F - percentage of sequence identity: 76
1h48 A - percentage of sequence identity: 76
1h48 B - percentage of sequence identity: 76
1h48 C - percentage of sequence identity: 76
1h48 D - percentage of sequence identity: 76
1h48 E - percentage of sequence identity: 76
1h48 F - percentage of sequence identity: 76
1jn1 A - percentage of sequence identity: 99
1jn1 B - percentage of sequence identity: 99
1jn1 C - percentage of sequence identity: 99
1jy8 A - percentage of sequence identity: 76
1knj A - percentage of sequence identity: 76
1knk A - percentage of sequence identity: 76
1t0a A - percentage of sequence identity: 70
1t0a B - percentage of sequence identity: 70
1t0a C - percentage of sequence identity: 70
1u3l A - percentage of sequence identity: 76
1u3p A - percentage of sequence identity: 76
1u40 A - percentage of sequence identity: 76
1u43 A - percentage of sequence identity: 76
1vh8 A - percentage of sequence identity: 100
1vh8 B - percentage of sequence identity: 100
1vh8 C - percentage of sequence identity: 100
1vh8 D - percentage of sequence identity: 100
1vh8 E - percentage of sequence identity: 100
1vh8 F - percentage of sequence identity: 100
1vha A - percentage of sequence identity: 100
1vha B - percentage of sequence identity: 100
1vha C - percentage of sequence identity: 100
1vha D - percentage of sequence identity: 100
1vha E - percentage of sequence identity: 100
1vha F - percentage of sequence identity: 100
1yqn A - percentage of sequence identity: 75