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Information on 2nap
PDB: 2nap
Compound: periplasmic nitrate reductase
Classification: OXIDOREDUCTASE
Entry date in PDB: 1999-09-19
Resolution [Å]: 1.90
R-Factor: 0.218


CHAIN: A
SWISS-PROT/TREMBL: P81186
   KEYWORD: 3D-structure    4Fe-4S    Electron transport    Iron-sulfur    Molybdenum    Nitrate assimilation    Oxidoreductase    Periplasmic    Signal   
EC: 1.7.99.4
SCOP: b.52.2.2 All beta proteins    Double psi beta-barrel    ADC-like    Formate dehydrogenase/DMSO reductase, C-terminal domain    Periplasmic nitrate reductase alpha chain, NapA    Desulfovibrio desulfuricans
SCOP: c.81.1.1 Alpha and beta proteins (a/b)    Formate dehydrogenase/DMSO reductase, domains 1-3    Formate dehydrogenase/DMSO reductase, domains 1-3    Formate dehydrogenase/DMSO reductase, domains 1-3    Periplasmic nitrate reductase alpha chain    Desulfovibrio desulfuricans
GO:  molybdenum ion binding    oxidoreductase activity   
2nap Image
Image Source: PDB

Stored Loops of 2nap

Loops in ArchDB40 clusters

2nap_A_362 - HA => SUBCLASS : 2.1.1
2nap_A_660 - HA => SUBCLASS : 2.2.17
2nap_A_469 - HA => SUBCLASS : 4.4.1
2nap_A_250 - HA => SUBCLASS : 5.3.1
2nap_A_67 - HA => SUBCLASS : 7.3.1
2nap_A_67 - HA => SUBCLASS : 7.12.1
2nap_A_260 - EH => SUBCLASS : 1.1.1
2nap_A_260 - EH => SUBCLASS : 1.1.2
2nap_A_367 - EH => SUBCLASS : 3.1.1
2nap_A_169 - EH => SUBCLASS : 3.19.1
2nap_A_411 - EH => SUBCLASS : 3.19.1
2nap_A_104 - EH => SUBCLASS : 4.2.2
2nap_A_339 - EH => SUBCLASS : 4.12.4
2nap_A_339 - EH => SUBCLASS : 4.15.4
2nap_A_216 - EH => SUBCLASS : 5.25.1
2nap_A_477 - EH => SUBCLASS : 12.1.1
2nap_A_668 - AR => SUBCLASS : 6.4.1
2nap_A_275 - HH => SUBCLASS : 3.1.1
2nap_A_419 - HH => SUBCLASS : 3.12.2
2nap_A_225 - HH => SUBCLASS : 4.1.6

Loops in ArchDB95 clusters

2nap_A_260 - EH => SUBCLASS : 1.1.1
2nap_A_77 - EH => SUBCLASS : 1.1.6
2nap_A_367 - EH => SUBCLASS : 3.2.2
2nap_A_169 - EH => SUBCLASS : 3.15.1
2nap_A_411 - EH => SUBCLASS : 3.15.1
2nap_A_339 - EH => SUBCLASS : 4.5.4
2nap_A_339 - EH => SUBCLASS : 4.11.2
2nap_A_104 - EH => SUBCLASS : 5.1.2
2nap_A_216 - EH => SUBCLASS : 5.33.1
2nap_A_477 - EH => SUBCLASS : 12.2.1
2nap_A_668 - AR => SUBCLASS : 6.5.2
2nap_A_275 - HH => SUBCLASS : 3.1.1
2nap_A_419 - HH => SUBCLASS : 3.14.1
2nap_A_225 - HH => SUBCLASS : 4.4.2
2nap_A_362 - HA => SUBCLASS : 2.1.1
2nap_A_660 - HA => SUBCLASS : 2.2.40
2nap_A_660 - HA => SUBCLASS : 2.2.46
2nap_A_362 - HA => SUBCLASS : 3.2.1
2nap_A_250 - HA => SUBCLASS : 4.3.2
2nap_A_469 - HA => SUBCLASS : 4.5.1
2nap_A_250 - HA => SUBCLASS : 5.4.1
2nap_A_67 - HA => SUBCLASS : 7.2.2
2nap_A_7 - HA => SUBCLASS : 8.24.1

Loops in ArchDB-EC clusters

2nap_A_225 - HH => SUBCLASS : 4.2.1

Loops not clustered in ArchDB

2nap_A_611 - AR
2nap_A_591 - AR
2nap_A_457 - AR
2nap_A_549 - AR
2nap_A_668 - AR
2nap_A_549 - AR
2nap_A_457 - AR
2nap_A_684 - AR
2nap_A_684 - AR
2nap_A_591 - AR
2nap_A_611 - AR
2nap_A_30 - EH
2nap_A_643 - EH
2nap_A_302 - EH
2nap_A_133 - EH
2nap_A_7 - HA
2nap_A_21 - HA
2nap_A_67 - HA
2nap_A_199 - HA
2nap_A_362 - HA
2nap_A_439 - HA
2nap_A_469 - HA
2nap_A_660 - HA
2nap_A_250 - HA
2nap_A_439 - HA
2nap_A_199 - HA
2nap_A_21 - HA
2nap_A_349 - HE
2nap_A_316 - HE
2nap_A_286 - HE
2nap_A_81 - HE
2nap_A_244 - HE
2nap_A_182 - HE
2nap_A_142 - HE
2nap_A_114 - HE
2nap_A_397 - HE
2nap_A_426 - HE
2nap_A_54 - HE
2nap_A_647 - HE
2nap_A_540 - HE
2nap_A_48 - HH
2nap_A_263 - HH
2nap_A_494 - HH
2nap_A_177 - HH
2nap_A_517 - HH
2nap_A_372 - HH

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