Information on SUBCLASS 1.2.8 |
Subclass Accession number: 3660
Subclass: 1.2.8 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 21 Average sequence ID (%) : 6.7 +/- 12.1 Average RMSD (Å) : 0.638 +/- 0.196 Consensus geometry
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Consensus Sequence: | XhpXX |
(φψ)-conformation: | bbabb |
Pattern: | x | x | [agilmvy] | [adeknqst] | [adgknqrst] | x | x | x |
Conservation: | -0.753 | -1.124 | 0.658 | 0.935 | 0.035 | -1.065 | 1.314 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b9m_A_201 | 1b9m | A | 205 | 212 | GIISHIER | EE---EEE | bbxabbbb |
1cbg_*_320 | 1cbg | - | 323 | 330 | LNYYSSYY | EE---EEE | bbbabbbx |
1dun_*_34 | 1dun | - | 37 | 44 | IPTDVKIQ | EE---EEE | xxbaxbbb |
1dv1_A_352 | 1dv1 | A | 352 | 358 | GKITRFH. | EE---EE. | exxabbb. |
1euc_B_98 | 1euc | B | 98 | 105 | VKVNKVMV | EE---EEE | bpbabbbb |
1f7d_A_18 | 1f7d | A | 20 | 27 | LLAAKEIH | EE-SS-EE | bbxabxbb |
1hpg_A_121 | 1hpg | A | 122 | 127 | QDISSA.. | EE--EE.. | bxbabb.. |
1ia9_A_1598 | 1ia9 | A | 1599 | 1606 | SWSQLGLC | EE-SS-EE | bxxaxxbx |
1ih7_A_402 | 1ih7 | A | 402 | 409 | NRYKYVMS | EE-SSEEE | exbabbbb |
1izd_A_203 | 1izd | A | 203 | 210 | DSSSDSIT | EEE---EE | xxbaxxbb |
1k5c_A_42 | 1k5c | A | 43 | 50 | VTMAGDIT | EEE-S-EE | bbxabxbb |
1p2z_A_180 | 1p2z | A | 180 | 186 | LSGETIT. | EE-S-EE. | xxbabbb. |
1p30_A_173 | 1p30 | A | 173 | 179 | YSGINIT. | EE-S-EE. | xbbabbb. |
1rmg_*_59 | 1rmg | - | 60 | 67 | YALNTWVT | EEE-S-EE | bbbabxbb |
1s18_A_210 | 1s18 | A | 211 | 218 | LIHESACW | EE---EEE | bbbabbbb |
1tgj_*_95 | 1tgj | - | 104 | 111 | MVVKSCKC | EEE-BEEE | abxabbbb |
1ug6_A_278 | 1ug6 | A | 281 | 288 | VNYYAPVR | EEES--EE | bbbabxbb |
2pii_*_91 | 2pii | - | 94 | 100 | FDVARVI. | EE-S-EE. | bxbabbb. |
2scu_B_91 | 2scu | B | 91 | 98 | QPVNQILV | EE---EEE | bxxabbbb |
2sfa_*_88 | 2sfa | - | 89 | 94 | RDITGA.. | EE--EE.. | bxxabb.. |
2tgi_*_95 | 2tgi | - | 104 | 111 | MIVKSCKC | EEE--EEE | abxabbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | L - 203 |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | P - 204 |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | G - 205 |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | I - 206 |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | I - 207 |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | S - 208 |
1b9m_A_201 | 1b9m | A | MSESELENOMETHIONINE | H - 209 |
1ia9_A_1598 | 1ia9 | A | DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE | K - 1608 |
1rmg_*_59 | 1rmg | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 59 |
1s18_A_210 | 1s18 | A | CACALCIUM ION | E - 214 |
1s18_A_210 | 1s18 | A | CACALCIUM ION | S - 215 |
1s18_A_210 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | C - 217 |
1s18_A_210 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | W - 218 |
1tgj_*_95 | 1tgj | * | DIO1,4-DIETHYLENE DIOXIDE | E - 99 |
1tgj_*_95 | 1tgj | * | DIO1,4-DIETHYLENE DIOXIDE | L - 101 |
1ug6_A_278 | 1ug6 | A | GOLGLYCEROL | N - 282 |
1ug6_A_278 | 1ug6 | A | GOLGLYCEROL | Y - 284 |
Clusters included in this Subclass |
CLUSTER: AR.2.38 |
CLUSTER: AR.3.20 |