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Information on SUBCLASS 2.3.1
Subclass Accession number: 3710
Subclass: 2.3.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 67

Average sequence ID (%) : 17.6 +/- 17.6
Average RMSD (Å) : 0.381 +/- 0.131

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hXXGXX
(φψ)-conformation: bbpgbb
Pattern: x[acfilmtv]xx[agkns][cdehkqrstwy]x[fhilvwy]x
Conservation:-0.5820.816-0.423-0.2342.357-0.541-0.722-0.046-0.626
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a78_A_61a78   A1119NLKPGHCVEEE-TTEEEElxbpvbbbb
1ahs_A_2151ahs   A216224NVAAGDVVAEE-TT--EExbxxvxxbx
1b0u_A_191b0u   A2836QARAGDVISEE-TT-EEEbbxpvxbbb
1cb8_A_5021cb8   A503511KTGRGKITTEE-TT-EEEbxxxvbbbb
1ciu_*_5081ciu   -508516MTKAGQTITEE-TT-EEEbbbpvxbbb
1cx4_A_3361cx4   A341348RCLRGQYF.EE-TT-EE.bbbpvxbb.
1d2e_A_2831d2e   A283291ILKKGDECEEEETT-EEEbbbpvxxbb
1e0t_A_831e0t   A8492SLKAGQTFTEE-TT-EEEbxxpUxxbb
1efc_A_2351efc   A235243IIKVGEEVEEEETT-EEEbbbxvxxbb
1efc_A_3551efc   A367375AMDDGLRFAEE-TT-EEExbbpvxxbb
1ep0_A_1111ep0   A113121FIPEGFAHGEE-TTEEEExbxpgbxbb
1exm_A_2461exm   A246254KVKVGDEVEEEETT-EEEbbbpgxxbb
1ext_A_1361ext   A138146TCHAGFFLREE-TTEEEEbxxpgbbxb
1fi2_A_1281fi2   A130138VIPRGLMHFEE-TT--EEbbppvxxbb
1flt_X_1441flt   X147155HMTEGRELVEE-TTS-EExbbpvbxbb
1g1t_A_1391g1t   A143149KCDPGFS..EE-TTEE..bxxpvbb..
1h2k_A_2601h2k   A264272VVGPGDVLYEE-TT-EEEbxbpgxbbx
1h2k_A_2701h2k   A272280YIPMYWWHHEE-TT-EEExbxpvxxbb
1h5z_A_3371h5z   A338346RIHEGDLVAEE-TT-EEExbbpgxxbb
1i5z_A_191i5z   A2230KYPSKSTLIEE-TT-EEEbbxpvxxab
1i5z_A_581i5z   A6370YLNQGDFI.EE-TT-EE.bbbpvxxb.
1itw_A_2071itw   A215223SVQAGEIIDEE-TT-EEExbbxvxbbb
1itw_A_4441itw   A449457SVEAGDIWREE-TT-EEExbbpvxbbb
1j1l_A_2101j1l   A211219KIEPHHTAVEE-TTEEEExbxpvbbbx
1j3l_A_1351j3l   A136144EVLPGSFLLEE-TT-EEExbbxgxbbb
1j3q_A_1181j3q   A122130EMEPGTIVYEE-TT-EEExbbpgxbbb
1j58_A_1301j58   A133141YFPSGLPHSEE-TT--EEbbppvxxbb
1jj2_J_121jj2   J1219.LEKGSLIT.EETT-EEE.bbxvxbbx
1jny_A_2881jny   A288296KAEPGDNIGEE-TT-EEEbbbpgxxbb
1juh_A_3001juh   A302310FIPGGVEFKEE-TT--EEbbwxvbxbb
1khu_A_3721khu   A373381KIPSGCSLKEE-TT-EEExbxpvxbbx
1ktj_A_271ktj   A2836IIHRGKPFQEEETTSEEExbxpvbxbx
1l2t_A_161l2t   A2735NIKEGEFVSEE-TT-EEEbbxxvxbbb
1l6p_A_281l6p   A3442QIKDGYYLYEE-TTEEEExbppvbbxx
1l7l_A_141l7l   A1927IYNPGDVITEE-TT--EEbxbpvxbbb
1lrh_A_881lrh   A9199PFFQNTTFSEE-TT-EEEwbbpvbbbb
1lrh_A_971lrh   A99107SIPVNDPHQEE-TT--EEbxppvxxbb
1m4z_A_491m4z   A4957KLGRGDSVVEE-TT-EEEbbbpgxxbx
1n0u_A_4041n0u   A404412TVKSGQKVREEETT-EEEbxbxvbxbb
1ne6_A_1871ne6   A191198SVGEGGSF.EE-TT-EE.bbxpgxbb.
1ne6_A_3101ne6   A315322RLGPSDYF.EE-TT-EE.bbbpvxbb.
1nxj_A_1391nxj   A140148TFVPGDIAYEE-TTSEEEbxbpgxbbb
1nxm_A_1171nxm   A120128FVPRGVANGEE-TTEEEExbxpgxxbb
1o4t_A_931o4t   A95103FTDSGESHSEE-TT-EEEbbxpvxbbb
1o75_A_3821o75   A389397DFTPGTEYTEE-TT-EEEbxxpgxxbb
1o7f_A_1021o7f   A106113TLGIGTAF.EE-TT-EE.bbbpvxbb.
1ofn_A_1111ofn   A113121YLPVGVGHAEE-TT-EEExbxpvxxbb
1ofz_A_1531ofz   A161169STAPGTGIGEESTT--EEbbpxlpxbb
1pk6_A_1771pk6   A186194QLQQGDQVWEE-TT-EEExbbpvxbbb
1pk6_C_1731pk6   C182190RLQVGEEVWEE-TT-EEExbbpvxbbb
1pkl_A_981pkl   A100108VMERGATCYEE-TT-EEExxbpgpxbb
1poc_*_401poc   -4047VMSAGESK.EE-TT-EE.bbxpvxbb.
1q3e_A_5711q3e   A573580KLSDGSYF.EE-TT-EE.bbbpvbbb.
1q5x_A_1361q5x   A137145TFFSGDHLYEE-TT-EEEbbbpgxbbb
1qqr_A_1831qqr   A187195TLAIGDTITEE-TT-EEEbbbpgxbbb
1qwr_A_1641qwr   A166174YVPSGTLHAEE-TT--EExbppvxxbb
1qxr_A_1171qxr   A121129SMEPGTVVYEE-TT-EEExbbpgxbbx
1qxr_A_1271qxr   A129137YVPPYWAHREE-TT-EEExxxpvxxbb
1r0w_A_4391r0w   A447455NIEKGEMLAEE-TT-EEEbbxpvxbbb
1rtv_A_1091rtv   A111119WIPAGFAHGEE-TTEEEExbxpgbbbb
1tdt_A_2261tdt   A226234RVPAGSVVVEE-TTEEEEbbppvxbbb
1upi_A_1101upi   A112120YVSEGLAHGEE-TT-EEExbxxvbbbb
1zxq_*_991zxq   -99107LVAVGKSFTEE-TTSEEEbbxpvbxbb
2arc_A_622arc   A6573VCRPGDILLEE-TT-EEExbbpgxbbb
2gpr_*_1472gpr   -148156EVKQGDVVAEE-TT-EEExbbpgxxab
2phl_A_2992phl   A301309VIPAAYPVAEE-TT--EExbxxvxwbb
2reb_*_562reb   -5663.LPMGRIVE.EETTSEEE.xxxvbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a78_A_61a78   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE C - 17
1a78_A_61a78   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE V - 18
1a78_A_61a78   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE E - 19
1b0u_A_191b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE H - 19
1b0u_A_191b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 21
1cx4_A_3361cx4   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE I - 339
1cx4_A_3361cx4   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE A - 340
1cx4_A_3361cx4   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE Y - 347
1cx4_A_3361cx4   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE F - 348
1ext_A_1361ext   A     MGMAGNESIUM ION R - 146
1fi2_A_1281fi2   A     MNMANGANESE (II) ION I - 131
1fi2_A_1281fi2   A     MNMANGANESE (II) ION H - 137
1fi2_A_1281fi2   A     MNMANGANESE (II) ION Q - 139
1h2k_A_2601h2k   A     FE2FE (II) ION I - 273
1h2k_A_2601h2k   A     OGAN-OXALYOLGLYCINE I - 273
1h2k_A_2701h2k   A     FE2FE (II) ION H - 279
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE H - 279
1h2k_A_2701h2k   A     FE2FE (II) ION I - 281
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE I - 281
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE E - 282
1i5z_A_191i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE I - 30
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE E - 58
1i5z_A_581i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL M - 59
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE M - 59
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE L - 61
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE S - 62
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE L - 64
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE F - 69
1i5z_A_581i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE I - 70
1j3l_A_1351j3l   A     MSESELENOMETHIONINE A - 145
1j3l_A_1351j3l   A     MSESELENOMETHIONINE D - 146
1j58_A_1301j58   A     MSESELENOMETHIONINE D - 130
1j58_A_1301j58   A     MSESELENOMETHIONINE L - 131
1j58_A_1301j58   A     MSESELENOMETHIONINE W - 132
1j58_A_1301j58   A     MNMANGANESE (II) ION F - 134
1j58_A_1301j58   A     MNMANGANESE (II) ION H - 140
1j58_A_1301j58   A     FMTFORMIC ACID H - 140
1j58_A_1301j58   A     MSESELENOMETHIONINE I - 142
1j58_A_1301j58   A     MNMANGANESE (II) ION I - 142
1j58_A_1301j58   A     FMTFORMIC ACID I - 142
1j58_A_1301j58   A     MSESELENOMETHIONINE G - 148
1j58_A_1301j58   A     MSESELENOMETHIONINE A - 149
1j58_A_1301j58   A     MSESELENOMETHIONINE E - 150
1l2t_A_161l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 18
1l2t_A_161l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 19
1l2t_A_161l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 20
1l7l_A_141l7l   A     CACALCIUM ION S - 35
1lrh_A_881lrh   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 94
1lrh_A_881lrh   A     NAGN-ACETYL-D-GLUCOSAMINE N - 95
1lrh_A_881lrh   A     ZNZINC ION I - 100
1lrh_A_971lrh   A     ZNZINC ION H - 106
1lrh_A_971lrh   A     NLANAPHTHALEN-1-YL-ACETIC ACID H - 106
1lrh_A_971lrh   A     NLANAPHTHALEN-1-YL-ACETIC ACID V - 108
1ne6_A_1871ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL A - 189
1ne6_A_1871ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL T - 190
1ne6_A_1871ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL V - 192
1ne6_A_1871ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL S - 197
1ne6_A_1871ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL F - 198
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL V - 313
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL G - 314
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL L - 316
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL Y - 321
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL F - 322
1o4t_A_931o4t   A     MNMANGANESE (II) ION H - 102
1o4t_A_931o4t   A     OXLOXALATE ION H - 102
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE W - 153
1ofz_A_1531ofz   A     AFLALPHA-L-FUCOSE W - 153
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE A - 155
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE G - 156
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE A - 157
1ofz_A_1531ofz   A     AFLALPHA-L-FUCOSE I - 173
1pk6_C_1731pk6   C     CACALCIUM ION Q - 173
1pk6_A_1771pk6   A     CACALCIUM ION Q - 177
1pk6_A_1771pk6   A     CACALCIUM ION V - 178
1poc_*_401poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 40
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE M - 572
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE L - 574
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE Y - 579
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE F - 580
1qwr_A_1641qwr   A     ZNZINC ION V - 167
1qwr_A_1641qwr   A     ZNZINC ION H - 173
1qxr_A_1271qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
1rtv_A_1091rtv   A     TARD(-)-TARTARIC ACID H - 118
1rtv_A_1091rtv   A     TARD(-)-TARTARIC ACID G - 119
1rtv_A_1091rtv   A     TARD(-)-TARTARIC ACID F - 120
1zxq_*_991zxq   *     NAGN-ACETYL-D-GLUCOSAMINE F - 106
1zxq_*_991zxq   *     NAGN-ACETYL-D-GLUCOSAMINE T - 107
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h2k_A_2701h2k   A FE1FE BINDING SITE FOR CHAIN AH - 279
1h2k_A_2701h2k   A OGAOGA BINDING SITE FOR CHAIN AI - 281
1ofz_A_1531ofz   A AC2AFL BINDING SITE FOR CHAIN AW - 153

Clusters included in this Subclass
CLUSTER: AR.3.18
CLUSTER: AR.3.45
CLUSTER: AR.4.32
CLUSTER: AR.5.147
CLUSTER: AR.5.8