ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.1.8

Subclass Accession number: 3750
Subclass: 3.1.8

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 18

Average sequence ID (%) : 7.9 +/- 12.0
Average RMSD (Å) : 0.728 +/- 0.127

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XXppXXX
(φψ)-conformation:	bbabpbb

Pattern:	x	[acilmptv]	x	[adegnrst]	x	x	x
Conservation:	0.051	0.681	-0.339	1.399	-1.850	0.168	-0.110

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1auk_*_325	1auk	-	326	332	VTHELAS	EE-S-EE	bbaxxbb
1ee6_A_3	1ee6	A	4	10	VVHETIR	EESS-EE	xxabpxx
1ew2_A_432	1ew2	A	432	438	HAGEDVA	EE-S-EE	xbaxpbx
1fi4_A_29	1fi4	A	29	35	LPTNSSI	EESS-EE	xxabxbb
1fny_A_32	1fny	A	32	38	LQLTNVV	EE-S-EE	xxabpbb
1hcb_*_207	1hcb	-	211	217	ICKESIS	EESS-EE	bxaxxbx
1hdh_A_400	1hdh	A	400	406	ISHAFAT	EE---EE	bbaxxbb
1iz5_A_60	1iz5	A	62	68	EVVEPET	EESS-EE	bbabwbb
1izd_A_203	1izd	A	204	210	SSSDSIT	EE---EE	xbaxxbb
1j79_A_311	1j79	A	314	320	LVREEQQ	EE---EE	bbabpbb
1k5c_A_42	1k5c	A	44	50	TMAGDIT	EE-S-EE	bxabxbb
1mwp_A_103	1mwp	A	105	111	CKTHPHF	EE---EE	xxaxwbb
1n67_A_482	1n67	A	482	488	QITTPYI	EE-S-EE	bbabxbb
1qni_A_140	1qni	A	144	150	NAEFVIP	EE-S-EE	bbabxbx
1qzq_A_531	1qzq	A	533	539	MIRSYEL	EE-SBEE	bbabbbb
1rmg_*_59	1rmg	-	61	67	ALNTWVT	EE-S-EE	bbabxbb
1tyv_*_143	1tyv	-	145	151	LIDRDYN	EE-S-EE	bxabpbx
2tgi_*_95	2tgi	-	105	111	IVKSCKC	EE--EEE	bxabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ew2_A_432	1ew2	A	ZNZINC ION	H - 432
1ew2_A_432	1ew2	A	PO4PHOSPHATE ION	H - 432
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	L - 29
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	P - 30
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	T - 31
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	N - 32
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	S - 33
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	S - 34
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	I - 35
1fi4_A_29	1fi4	A	MSESELENOMETHIONINE	V - 37
1hcb_*_207	1hcb	*	BCTBICARBONATE ION	V - 207
1hcb_*_207	1hcb	*	ZNZINC ION	W - 209
1hcb_*_207	1hcb	*	BCTBICARBONATE ION	W - 209
1rmg_*_59	1rmg	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 59

Clusters included in this Subclass

CLUSTER: AR.2.37