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Information on SUBCLASS 4.2.2
Subclass Accession number: 3877
Subclass: 4.2.2 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 17.1 +/- 18.7
Average RMSD (Å) : 0.527 +/- 0.284

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XhXXcpXh
(φψ)-conformation: bbpplpba
Pattern: xx[AFILPV][ehknqrtwy][dekpr][agnr][adenqst]x[FGILVW]
Conservation:-1.000-0.3270.891-1.371-0.4471.739-0.149-0.8450.508
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dun_*_911dun   -9199IKLIEGQKFEEE-TT-EEbbbxpvxxa
1euw_A_1091euw   A109117FTIQPGERIEEE-TT-EEbbxxpvxxa
1f7d_A_901f7d   A9098ITLMERQKIEEE-TT-EEbbxxpvxxa
1fm0_E_861fm0   E8694GELWPGDEIEEE-TT-EEexbbpgxxa
1gnx_A_161gnx   A1624LTFPEGFLWEE--TT-EExbxpxvpxb
1je5_A_111je5   A1119GTAEPYAYIEEE-SS-EEbbxxxvxba
1jj2_H_1171jj2   H123131ARVHGANHIEEE-TT-EEbxbxpvxba
1onl_A_491onl   A4956.VVEKGEAV.EE-TT-EE.bbxpvxxa
1pkh_A_1531pkh   A153161VILYKNQRIEEEETT-EEbxbbpvxxa
1q5h_A_981q5h   A98106FEVKKGDRIEEE-TT-EEbbbbpvxxa
1qpo_A_721qpo   A7684DRVEDGARVEE--TT-EEbbbxpgxxb
1six_A_1031six   A103111IVVHRGDRIEEE-TT-EEbbbbpvxxa
1tul_*_931tul   -93101IKLNKGQMLEEE-TT-EExbbxpvxxa
1uou_A_4301uou   A430437.RLRRGTPW.EE-TT-EE.xbxxvxwa
1wbf_A_401wbf   A4047.VPTWNSTG.EE-SS-EE.bxbxlbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1pkh_A_1531pkh   A     EGLETHYLENE GLYCOL N - 158
1pkh_A_1531pkh   A     EGLETHYLENE GLYCOL Q - 159
1pkh_A_1531pkh   A     EGLETHYLENE GLYCOL R - 160
1q5h_A_981q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE R - 105
1q5h_A_981q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE Q - 108
1q5h_A_981q5h   A     MGMAGNESIUM ION E - 112
1q5h_A_981q5h   A     MGMAGNESIUM ION R - 113
1six_A_1031six   A     MGMAGNESIUM ION R - 110
1six_A_1031six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE R - 110
1six_A_1031six   A     MGMAGNESIUM ION Q - 113
1six_A_1031six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE Q - 113
1wbf_A_401wbf   A     NAGN-ACETYL-D-GLUCOSAMINE W - 43
1wbf_A_401wbf   A     NAGN-ACETYL-D-GLUCOSAMINE N - 44
1wbf_A_401wbf   A     NAGN-ACETYL-D-GLUCOSAMINE S - 45

Clusters included in this Subclass
CLUSTER: AR.3.256
CLUSTER: AR.3.85
CLUSTER: AR.4.130
CLUSTER: AR.4.87
CLUSTER: AR.5.52