ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.6.1

Subclass Accession number: 3897
Subclass: 4.6.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 18

Average sequence ID (%) : 9.5 +/- 12.9
Average RMSD (Å) : 0.667 +/- 0.261

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	XhXXXpXh
(φψ)-conformation:	bbpaapbb

Pattern:	x	x	x	[AFILMVY]	[dehnpst]	x	[adegnqs]	[deknsty]	x	[afgilvwy]	x
Conservation:	-1.000	-0.988	-0.344	2.145	-0.001	0.316	1.067	-0.562	-0.689	0.170	-1.116

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b77_A_215	1b77	A	217	226	VIAMEADSTH.	EEE--TT-EE.	bbxbxaaxbb.
1b7y_B_290	1b7y	B	290	300	ERTLHPEDLVI	EEE--TT-EEE	xbbxbaapxbb
1br9_*_95	1br9	-	95	105	KMHITLCDFIV	EEE--TTS-EE	bbbbbaaxxbb
1cr5_A_196	1cr5	A	196	205	.GILTKQTQIN	.EE--TT-EEE	.bxxbaaxxbb
1czd_A_1214	1czd	A	1217	1226	VVALEADSTH.	EEE--TT-EE.	bbxxxaaxbb.
1fgu_A_276	1fgu	A	277	287	EMTFNNETSVM	EEE--TT-EEE	bbbxbaaxbbb
1gkp_A_392	1gkp	A	392	402	LVVYDPQYRGT	EEEEETT--EE	bbxbxaaxbbb
1h5r_A_213	1h5r	A	215	225	VAMMGRGYAWL	EEE--TTSEEE	bxxbpaaxbbb
1hp1_A_483	1hp1	A	483	492	.EPVDPAKTYR	.EE--TTSEEE	.bxxbaaxbbb
1i2h_A_1054	1i2h	A	1058	1068	NSTITPNMTFT	EEE--TT--EE	bbxxbaaxbxb
1j7n_A_499	1j7n	A	502	512	RIQLSPDTRAG	EEE--TT-BEE	bbxxbaaxxbb
1jak_A_35	1jak	A	35	44	.YRITRGTHIR	.EE--TT--EE	.bbxbaaxbbx
1jd0_A_66	1jd0	A	67	77	KLNLPSDMHIQ	EEE--TTSEEE	bbxbxaaxbbb
1lk9_A_24	1lk9	A	24	33	.GRAFLDGIIS	.EE--TTS-EE	.bbbbaaxxxb
1n7v_A_50	1n7v	A	56	66	VSNFDSSNRLP	EE---TTSEEE	bxxbbaaxbbx
1pbg_A_3	1pbg	A	3	12	.KTLPKDFIFG	.EE--TT-EEE	.xbbwaapxbb
1qpo_A_83	1qpo	A	83	91	..RVPPGEALM	..EE-TT-EEE	..xbxaaxxab
1un7_A_45	1un7	A	46	56	EIQAPADSVLL	EEE--TT-EEE	bbxxxaaxbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h5r_A_213	1h5r	A	THMTHYMIDINE	R - 220
1h5r_A_213	1h5r	A	THMTHYMIDINE	G - 221
1h5r_A_213	1h5r	A	G1PALPHA-D-GLUCOSE-1-PHOSPHATE	W - 224
1n7v_A_50	1n7v	A	ACTACETATE ION	L - 52
1n7v_A_50	1n7v	A	ACTACETATE ION	H - 53
1n7v_A_50	1n7v	A	ACTACETATE ION	A - 54

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h5r_A_213	1h5r	A	SO4SO4 BINDING SITE FOR CHAIN A	G - 219
1h5r_A_213	1h5r	A	SO4SO4 BINDING SITE FOR CHAIN A	R - 220
1h5r_A_213	1h5r	A	SO4SO4 BINDING SITE FOR CHAIN A	G - 221

Clusters included in this Subclass

CLUSTER: AR.4.257

CLUSTER: AR.5.134

CLUSTER: AR.5.62

CLUSTER: AR.6.176

CLUSTER: AR.6.27

CLUSTER: AR.7.57