ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 0.1.40

Subclass Accession number: 6991
Subclass: 0.1.40

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 2.4 +/- 6.3
Average RMSD (Å) : 0.575 +/- 0.150

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 0-45

rho (°): 225-270

Consensus Sequence:	XpXX
(φψ)-conformation:	bbaa

Pattern:	x	[DES]	x	x	x	x	x
Conservation:	-0.715	1.953	-0.715	-0.210	-0.904	0.548	0.043

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gx3_A_38	1gx3	A	38	44	FENLDPL	EE-HHHH	xbaaaaa
1kpg_A_221	1kpg	A	226	232	QSLQPHY	EE-HHHH	bxaaaaa
1m5h_A_114	1m5h	A	114	120	KDDTGFK	EE-HHHH	bbaaaaa
1req_B_232	1req	B	236	242	IDANIYH	EETHHHH	xxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	Q - 229
1kpg_A_221	1kpg	A	CO3CARBONATE ION	Y - 232
1kpg_A_221	1kpg	A	16ACETYL-TRIMETHYL-AMMONIUM	Y - 232
1kpg_A_221	1kpg	A	16ACETYL-TRIMETHYL-AMMONIUM	L - 236
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	L - 238
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	W - 239
1kpg_A_221	1kpg	A	16ACETYL-TRIMETHYL-AMMONIUM	W - 239
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	S - 240
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	A - 241
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	L - 243
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	Q - 244
1kpg_A_221	1kpg	A	MSESELENOMETHIONINE	A - 245
1req_B_232	1req	B	GOLGLYCEROL	N - 239

Clusters included in this Subclass

CLUSTER: EH.0.42