ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.1.31

Subclass Accession number: 2660
Subclass: 1.1.31

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 11.7 +/- 16.4
Average RMSD (Å) : 0.410 +/- 0.110

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 45-90

rho (°): 270-315

Consensus Sequence:	XhpXp
(φψ)-conformation:	bbpaa

Pattern:	x	[AFILPV]	[ADQST]	[cdek]	[adegst]	[aflvw]	x
Conservation:	-1.022	-0.119	1.909	-0.374	0.683	-0.300	-0.776

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ag9_A_61	1ag9	A	61	67	EAQCDWD	EE-HHHH	xxpaaaa
1aq0_A_142	1aq0	A	142	148	SFTGEAA	EE-HHHH	bxxaaaa
1bam_*_2	1bam	-	7	13	FITDEAK	EE-HHHH	bbxaaaa
1e9m_A_49	1e9m	A	51	57	YVDPAWV	EE-HHHH	bxxaaaa
1lfk_A_17	1lfk	A	17	23	DPADELL	EE-HHHH	bxpaaaa
1n9l_A_34	1n9l	A	36	42	YASEGFY	EE-HHHH	bbxaaaa
1ny5_A_338	1ny5	A	338	344	GFTKSAQ	EE-HHHH	bbxaaaa
1ro2_A_238	1ro2	A	238	244	TLSKTAK	EE-HHHH	bxxaaaa
1rqj_A_119	1rqj	A	119	125	LPTCHVK	EE-HHHH	bpxaaaa
1v7c_A_262	1v7c	A	265	271	AVTDEEI	EE-HHHH	bbxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ag9_A_61	1ag9	A	FMNFLAVIN MONONUCLEOTIDE	E - 61
1ag9_A_61	1ag9	A	CACALCIUM ION	E - 61
1ag9_A_61	1ag9	A	FMNFLAVIN MONONUCLEOTIDE	Q - 63
1ag9_A_61	1ag9	A	CACALCIUM ION	C - 64
1ag9_A_61	1ag9	A	CACALCIUM ION	D - 67
1ag9_A_61	1ag9	A	CACALCIUM ION	D - 68
1e9m_A_49	1e9m	A	FESFE2/S2 (INORGANIC) CLUSTER	H - 49
1n9l_A_34	1n9l	A	FMNFLAVIN MONONUCLEOTIDE	L - 34
1n9l_A_34	1n9l	A	FMNFLAVIN MONONUCLEOTIDE	F - 41
1ny5_A_338	1ny5	A	PO4PHOSPHATE ION	T - 340
1ny5_A_338	1ny5	A	PO4PHOSPHATE ION	K - 341
1ny5_A_338	1ny5	A	PO4PHOSPHATE ION	S - 342
1ny5_A_338	1ny5	A	PO4PHOSPHATE ION	A - 343

Clusters included in this Subclass

CLUSTER: EH.0.28