ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.1.3

Subclass Accession number: 2875
Subclass: 3.1.3

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 19

Average sequence ID (%) : 11.6 +/- 14.9
Average RMSD (Å) : 0.632 +/- 0.240

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXXhppX
(φψ)-conformation:	bbpppaa

Pattern:	x	[aimptv]	x	[filpvy]	[DENPRST]	[dekqrsty]	[adegkrs]	[dekpqs]	[acfgilvy]	x
Conservation:	-0.504	0.145	-1.240	-0.381	2.308	-0.611	-0.568	0.907	0.285	-0.340

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bqu_A_199	1bqu	A	202	211	ITYEDRPSKE	EE---HHHHH	bxxxbaaaaa
1bsg_*_94	1bsg	-	94	103	RILYTQDDVE	EE---HHHHH	xbbbbaaaaa
1cgh_A_156	1cgh	A	160	169	LRVQRDRQCL	EEB--HHHHH	bbxbxaaaaa
1dl2_A_529	1dl2	A	530	539	FPVLDEEILK	EE---HHHHH	bxxxxaaaaa
1fxy_A_156	1fxy	A	160	169	APVLSQAKCE	EEB--HHHHH	bxxxxaaaaa
1g9k_A_28	1g9k	A	28	37	KPSFTVDQVA	EE---HHHHH	bxxbxaaaaa
1h8d_H_156	1h8d	H	160	169	LPIVERPVCK	EEB--HHHHH	bxxbpaaaaa
1hj8_A_156	1hj8	A	160	169	IPILSYSDCN	EEB--HHHHH	bxxxxaaaaa
1hj9_A_156	1hj9	A	160	169	APILSDSSCK	EEB--HHHHH	bxxxxaaaaa
1iau_A_156	1iau	A	160	169	MTVQEDRKCE	EEB--HHHHH	bxxxxaaaaa
1kgs_A_148	1kgs	A	149	158	EIDLTKKEYQ	EE---HHHHH	xxxxxaaaaa
1l5j_A_606	1l5j	A	608	617	TIKLNKEPII	EE---HHHHH	bbxbxaaaaa
1lc0_A_53	1lc0	A	53	62	VRQISLEDAL	EEB--HHHHH	xxxbxaaaaa
1lml_*_555	1lml	-	556	565	ITCPPYVEVC	EE---HHHHH	bbxwwaaaaa
1m9u_A_156	1m9u	A	160	169	IPVITTAQCT	EEB--HHHHH	bxxbxaaaaa
1nqz_A_136	1nqz	A	139	148	IITPTLAELR	EE--BHHHHH	bbbxxaaaaa
1opc_*_157	1opc	-	158	167	PMPLTSGEFA	EE---HHHHH	wbxbpaaaaa
1pmi_*_110	1pmi	-	111	120	QAHPDKKLGA	EE---HHHHH	bbbxxaaaaa
1ub0_A_133	1ub0	A	133	142	LVTPNRLEAE	EE--BHHHHH	bbbxxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cgh_A_156	1cgh	A	SINSUCCINIC ACID	I - 171
1iau_A_156	1iau	A	ZNZINC ION	E - 157
1iau_A_156	1iau	A	ZNZINC ION	V - 158
1iau_A_156	1iau	A	ZNZINC ION	K - 159
1iau_A_156	1iau	A	ZNZINC ION	Q - 163
1iau_A_156	1iau	A	ZNZINC ION	D - 165
1iau_A_156	1iau	A	ZNZINC ION	R - 166
1iau_A_156	1iau	A	ZNZINC ION	E - 169
1kgs_A_148	1kgs	A	SCNTHIOCYANATE ION	K - 148
1kgs_A_148	1kgs	A	MSESELENOMETHIONINE	L - 160
1kgs_A_148	1kgs	A	MSESELENOMETHIONINE	E - 161
1kgs_A_148	1kgs	A	MSESELENOMETHIONINE	Y - 162
1kgs_A_148	1kgs	A	MSESELENOMETHIONINE	L - 163
1pmi_*_110	1pmi	*	ZNZINC ION	Q - 111
1pmi_*_110	1pmi	*	ZNZINC ION	A - 112
1pmi_*_110	1pmi	*	ZNZINC ION	H - 113

Clusters included in this Subclass

CLUSTER: EH.2.35