Logo
Information on SUBCLASS 3.6.6
Subclass Accession number: 1177
Subclass: 3.6.6 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005507 (>75 %)  GO:0016788 (>50 %)  GO:0042578 (>50 %)  GO:0046914 (>75 %)  
SCOP : 49502 (>75 %)  49503 (>75 %)  49550 (>75 %)  
 Number of loops: 2

Average sequence ID (%) : 4.8 +/- 0.0
Average RMSD (Å) : 0.400 +/- 0.000

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: hhppXhp
(φψ)-conformation: bbappaa
Pattern: [DG][EL][GI][NV][FL][LP][IL][ST][D][WY][WY][HY][QR][AS][AI][DH][DK]xx[HV][FG]
Conservation:-0.037-1.110-1.264-0.957-0.037-0.8040.2700.1172.1111.8041.8041.3440.270-0.037-0.6500.270-0.190-0.804-0.804-0.650-0.650
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_1351aoz   A135155GEINLLLSDWWHQSIHKQEVGEEEEEEEEEE-SS-HHHHHHHbbbbbbbbbbbaxpaaaaaaa
1gw0_A_1651gw0   A166186DLGVFPITDYYYRAADDLVHFEEEEEEEEEE-SS-HHHHHHHbaexbwbbxbbaxxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE L - 167
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE G - 168
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE V - 169
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE F - 170
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE P - 171
1gw0_A_1651gw0   A     O2OXYGEN MOLECULE R - 178
1gw0_A_1651gw0   A     BMABETA-D-MANNOSE R - 178
1gw0_A_1651gw0   A     MANALPHA-D-MANNOSE R - 178
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE A - 179
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE A - 180
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE D - 181
1gw0_A_1651gw0   A     O2OXYGEN MOLECULE D - 182
1gw0_A_1651gw0   A     NAGN-ACETYL-D-GLUCOSAMINE D - 182
1gw0_A_1651gw0   A     BMABETA-D-MANNOSE D - 182
1gw0_A_1651gw0   A     MANALPHA-D-MANNOSE D - 182
1gw0_A_1651gw0   A     O2OXYGEN MOLECULE H - 185
1gw0_A_1651gw0   A     BMABETA-D-MANNOSE H - 185
1gw0_A_1651gw0   A     MANALPHA-D-MANNOSE H - 185
1gw0_A_1651gw0   A     BMABETA-D-MANNOSE F - 186
1gw0_A_1651gw0   A     MANALPHA-D-MANNOSE F - 186
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gw0_A_1651gw0   A CC9NAG BINDING SITE FOR CHAIN AL - 167
1gw0_A_1651gw0   A AC9NAG BINDING SITE FOR CHAIN AA - 179
1gw0_A_1651gw0   A AC9NAG BINDING SITE FOR CHAIN AD - 181
1gw0_A_1651gw0   A AC9NAG BINDING SITE FOR CHAIN AD - 182
1gw0_A_1651gw0   A BC3MAN BINDING SITE FOR CHAIN AH - 185

Clusters included in this Subclass
CLUSTER: EH.3.248