ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.20.1

Subclass Accession number: 1298
Subclass: 4.20.1

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.1 (>50 %)  1.1.1 (>50 %)
GO : GO:0016614 (>50 %)  GO:0016616 (>50 %)
SCOP : 51430 (>75 %)  51430 (>75 %)  51431 (>75 %)  51431 (>75 %)

Number of loops: 12

Average sequence ID (%) : 10.0 +/- 14.6
Average RMSD (Å) : 0.817 +/- 0.255

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	XhXXhXhp
(φψ)-conformation:	bbplbpaa

Pattern:	x	x	x	[AFGLV]	[adegnp]	[adgns]	[cfimvy]	x	[glmpv]	[ekrstw]	x	x	x	x
Conservation:	-1.000	-1.236	0.617	1.098	-0.203	1.563	1.176	-0.416	-1.263	0.594	-1.374	0.591	-0.603	-0.545

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ed8_A_44	1ed8	A	47	60	LLIGDGMGDSEITA	EEEETT--HHHHHH	bbbxxvxxaaaaaa
1eg5_A_294	1eg5	A	296	309	SVSFPNIRGSTLQN	EEE-TT--HHHHHH	bbbxpvbpaaaaaa
1ew2_A_35	1ew2	A	38	51	IFLGDGMGVSTVTA	EEEETT--HHHHHH	bbbxxvxxaaaaaa
1f75_A_141	1f75	A	142	155	LVFALNYGGRKEII	EEEE-S--HHHHHH	xbbxblbbaaaaaa
1g55_A_307	1g55	A	308	321	LQTAEDVQVENIYK	EE--SS--HHHHHH	xxaxxvbbaaaaaa
1iuk_A_120	1iuk	A	120	131	..VVADRCLMVEHK	..EEES--HHHHHH	..bbblbxaaaaaa
1ln1_A_51	1ln1	A	57	70	FGVLEDCSPTLLAD	EEEETTS-HHHHHH	bebbxvbpaaaaaa
1p3w_A_300	1p3w	A	302	315	NVSFNYVEGESLIM	EEEETTS-HHHHHH	bbbbxvbxaaaaaa
1pvd_A_319	1pvd	A	319	331	.ATFPGVQMKFVLQ	.EEEET--HHHHHH	.xbbxvxxaaaaaa
1ueh_A_138	1ueh	A	139	152	LNIAANYGGRWDIV	EEEEES--HHHHHH	bbbxblbbaaaaaa
1v8c_A_87	1v8c	A	90	103	ERTFGAFPPWLLER	EEEEET--HHHHHH	bbbbxlbxaaaaaa
1zpd_A_317	1zpd	A	317	329	.IRFPSVHLKDYLT	.EEEES--HHHHHH	.bbbxvbxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ed8_A_44	1ed8	A	ZNZINC ION	D - 51
1ed8_A_44	1ed8	A	MGMAGNESIUM ION	D - 51
1ed8_A_44	1ed8	A	PO4PHOSPHATE ION	D - 51
1ed8_A_44	1ed8	A	ZNZINC ION	G - 52
1ed8_A_44	1ed8	A	PO4PHOSPHATE ION	G - 52
1eg5_A_294	1eg5	A	MSESELENOMETHIONINE	S - 312
1ew2_A_35	1ew2	A	MGMAGNESIUM ION	L - 40
1ew2_A_35	1ew2	A	ZNZINC ION	D - 42
1ew2_A_35	1ew2	A	MGMAGNESIUM ION	D - 42
1ew2_A_35	1ew2	A	PO4PHOSPHATE ION	D - 42
1ew2_A_35	1ew2	A	ZNZINC ION	G - 43
1ew2_A_35	1ew2	A	PO4PHOSPHATE ION	G - 43
1g55_A_307	1g55	A	CRYPROPANE-1,2,3-TRIOL	V - 307
1ln1_A_51	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	Y - 54
1ln1_A_51	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	V - 56
1ln1_A_51	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	L - 60
1ln1_A_51	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	L - 68
1ln1_A_51	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	Y - 72
1zpd_A_317	1zpd	A	CITCITRIC ACID	R - 318
1zpd_A_317	1zpd	A	CITCITRIC ACID	F - 319
1zpd_A_317	1zpd	A	CITCITRIC ACID	P - 320
1zpd_A_317	1zpd	A	CITCITRIC ACID	S - 321
1zpd_A_317	1zpd	A	CITCITRIC ACID	V - 322
1zpd_A_317	1zpd	A	CITCITRIC ACID	H - 323

Clusters included in this Subclass