ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.20.1

Subclass Accession number: 7481
Subclass: 5.20.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 48.6 +/- 24.4
Average RMSD (Å) : 0.314 +/- 0.107

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hhTGhXXGh
(φψ)-conformation:	bbplaabea

Pattern:	[CIV]	[ACV]	[ILV]	[ILV]	[T]	[G]	[ACS]	[GS]	[AGRST]	[G]	[FIL]	[G]	[kr]	[aes]	[ILMY]	[A]	[ilmpv]	[AEQRT]	[FL]	[AG]
Conservation:	-0.220	-0.666	-0.064	0.101	1.283	1.836	-0.368	-0.138	-1.200	1.836	-0.293	1.836	-0.550	-0.984	-0.557	0.730	-1.322	-1.083	-0.124	-0.054

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fmc_A_13	1fmc	A	13	32	CAIITGAGAGIGKEIAITFA	EEEETTTTSHHHHHHHHHHH	bbbbxlaabeaaaaaaaaaa
1g0o_A_31	1g0o	A	31	50	VALVTGAGRGIGREMAMELG	EEEETTTTSHHHHHHHHHHH	bbbbxvaabeaaaaaaaaaa
1gee_A_9	1gee	A	9	28	VVVITGSSTGLGKSMAIRFA	EEEETT-SSHHHHHHHHHHH	xbbbxlaabeaaaaaaaaaa
1gz6_A_11	1gz6	A	11	30	VVLVTGAGGGLGRAYALAFA	EEEETTTTSHHHHHHHHHHH	bbbbxvaabeaaaaaaaaaa
1i01_A_7	1i01	A	7	26	IALVTGASRGIGRAIAETLA	EEEESS-SSHHHHHHHHHHH	bbbbxvaabeaaaaaaaaaa
1jtv_A_3	1jtv	A	4	23	VVLITGCSSGIGLHLAVRLA	EEEES--SSHHHHHHHHHHH	xbbbxvaabeaaaaaaaaaa
1oaa_*_9	1oaa	-	10	29	VCVLTGASRGFGRALAPQLA	EEEESS-SSHHHHHHHHHHH	bbbbxlaabeaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 17
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 18
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 19
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 20
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 21
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 22
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 23
1fmc_A_13	1fmc	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 24
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	T - 35
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 36
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 37
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 38
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	R - 39
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 40
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	I - 41
1g0o_A_31	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 42
1gee_A_9	1gee	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 13
1gee_A_9	1gee	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 14
1gee_A_9	1gee	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	S - 15
1gee_A_9	1gee	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	S - 16
1gee_A_9	1gee	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 19
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	T - 15
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 16
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	A - 17
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 18
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 19
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 20
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	L - 21
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 22
1gz6_A_11	1gz6	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	Y - 25
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	T - 14
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 15
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 16
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 17
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	R - 18
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 19
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	F - 20
1oaa_*_9	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 21

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gz6_A_11	1gz6	A	AC6NAI BINDING SITE FOR CHAIN A	G - 16
1gz6_A_11	1gz6	A	AC6NAI BINDING SITE FOR CHAIN A	G - 19
1gz6_A_11	1gz6	A	AC6NAI BINDING SITE FOR CHAIN A	G - 20
1gz6_A_11	1gz6	A	AC6NAI BINDING SITE FOR CHAIN A	L - 21

Clusters included in this Subclass

CLUSTER: EH.4.76