ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.42.1

Subclass Accession number: 3279
Subclass: 5.42.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 10.0 +/- 12.2
Average RMSD (Å) : 0.960 +/- 0.251

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXXhpXXpX
(φψ)-conformation:	bbpaaalaa

Pattern:	x	x	x	x	[APV]	[DEKST]	[agq]	[AGR]	[DKQT]	[GRS]	x	[nqs]	x	x	[aem]	x	x	x	[KRSY]
Conservation:	-0.281	-1.010	-0.106	-0.601	2.394	0.570	0.063	0.783	0.773	2.080	-1.070	0.053	-0.248	-0.679	0.101	-0.680	-1.606	-0.445	-0.093

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1i0d_A_198	1i0d	A	200	218	THTAASQRDGEQQAAIFES	EE--GGGTHHHHHHHHHHH	bbbbaaavaaaaaaaaaaa
1k0i_A_289	1k0i	A	289	307	HIVPPTGAKGLNLAASDVS	EE--GGGT-HHHHHHHHHH	bbbxaaalaaaaaaaaaaa
1lw3_A_159	1lw3	A	163	181	FAHKPEGRTRRSIFENLMK	EE--GGG--HHHHHHHHHH	bbbxaaalaaaaaaaaaaa
1n0u_A_19	1n0u	A	24	42	VIAHVDHGKSTLTDSLVQR	EE--GGGTHHHHHHHHHHH	bbbxaaavaaaaaaaaaaa
1pn0_A_360	1pn0	A	360	378	HTHSPKAGQGMNTSMMDTY	EE--STT--HHHHHHHHHH	bbbxaaalaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i0d_A_198	1i0d	A	CBXCARBOXY GROUP	T - 200
1i0d_A_198	1i0d	A	ZNZINC ION	H - 201
1i0d_A_198	1i0d	A	CDCADMIUM ION	H - 201
1i0d_A_198	1i0d	A	CBXCARBOXY GROUP	H - 201
1i0d_A_198	1i0d	A	EGLETHYLENE GLYCOL	H - 201
1i0d_A_198	1i0d	A	CDCADMIUM ION	T - 202
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	H - 289
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	H - 289
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 290
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	I - 290
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 291
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	V - 291
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 293
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	P - 293
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	T - 294
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	G - 295
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 296
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	A - 296
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 297
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 298
1k0i_A_289	1k0i	A	PHBP-HYDROXYBENZOIC ACID	G - 298
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 299
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	N - 300
1k0i_A_289	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 302
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	H - 362
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 363
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 364
1pn0_A_360	1pn0	A	IPHPHENOL	P - 364
1pn0_A_360	1pn0	A	IPHPHENOL	K - 365
1pn0_A_360	1pn0	A	IPHPHENOL	A - 366
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 367
1pn0_A_360	1pn0	A	IPHPHENOL	G - 367
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 368
1pn0_A_360	1pn0	A	IPHPHENOL	Q - 368
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 369
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	M - 370
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 373
1pn0_A_360	1pn0	A	FADFLAVIN-ADENINE DINUCLEOTIDE	M - 374

Clusters included in this Subclass

CLUSTER: EH.6.101

CLUSTER: EH.7.64