Information on SUBCLASS 6.16.1 |
Subclass Accession number: 1481
Subclass: 6.16.1 Type: EH beta-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0000287 (>75 %) GO:0004872 (>75 %) GO:0005515 (>75 %) GO:0016301 (>75 %) GO:0016772 (>75 %) GO:0016773 (>75 %) SCOP : 53299 (>75 %) 53300 (>75 %) 53301 (>75 %) 54861 (>75 %) 55060 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 13.5 +/- 15.6 Average RMSD (Å) : 0.820 +/- 0.045 Consensus geometry
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Consensus Sequence: | hphchXhXXX |
(φψ)-conformation: | bbagbpbpaa |
Pattern: | [ipw] | [AIVY] | [AGLV] | [stv] | [ACFTV] | x | [LPTV] | [GK] | [CFLV] | [PRS] | [ilv] | [DPRS] | [LT] | [EKP] | [AGLTV] | [ILV] | [AFVY] |
Conservation: | -1.837 | 0.303 | -0.856 | -0.230 | -0.718 | -0.771 | -0.490 | 1.282 | 0.041 | 0.185 | 0.274 | -0.328 | 1.279 | 1.072 | -1.086 | 2.124 | -0.243 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1kvk_A_230 | 1kvk | A | 231 | 247 | QILLTNTKVPRSTKALV | EEEEEE------HHHHH | xbbxbbavxwbbaaaaa |
1nh2_A_153 | 1nh2 | A | 160 | 176 | IVGSCDVKFPIRLEGLA | EEEEEE-SS-B-HHHHH | bbbbbbalbxbxaaaaa |
1nh2_A_66 | 1nh2 | A | 70 | 86 | IVATVTLGCRLDLKTVA | EEEEEE-SS---HHHHH | bbbbbbavbxbxaaaaa |
1oj4_A_169 | 1oj4 | A | 169 | 185 | WYLVAHPGVSIPTPVIF | EEEEE--S----HHHHH | xbbbbbagxxxxaaaaa |
1uek_A_152 | 1uek | A | 153 | 169 | PAVVFFPGLRVPTPLVY | EEEEEE------HHHHH | wbbbbbavbxbpaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1nh2_A_153 | 1nh2 | A | 5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | V - 161 |
1oj4_A_169 | 1oj4 | A | MSESELENOMETHIONINE | H - 174 |
1oj4_A_169 | 1oj4 | A | MSESELENOMETHIONINE | S - 178 |
1oj4_A_169 | 1oj4 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | S - 178 |
1oj4_A_169 | 1oj4 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | I - 179 |
1oj4_A_169 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | T - 181 |
1oj4_A_169 | 1oj4 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | T - 181 |
1oj4_A_169 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | P - 182 |
1oj4_A_169 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | F - 185 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oj4_A_169 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | T - 181 |
Clusters included in this Subclass |
CLUSTER: EH.6.50 |