Logo
Information on SUBCLASS 6.16.1
Subclass Accession number: 1481
Subclass: 6.16.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0000287 (>75 %)  GO:0004872 (>75 %)  GO:0005515 (>75 %)  GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016773 (>75 %)  
SCOP : 53299 (>75 %)  53300 (>75 %)  53301 (>75 %)  54861 (>75 %)  55060 (>75 %)  
Number of loops: 5

Average sequence ID (%) : 13.5 +/- 15.6
Average RMSD (Å) : 0.820 +/- 0.045

Consensus geometry
d (Å): 17 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: hphchXhXXX
(φψ)-conformation: bbagbpbpaa
Pattern: [ipw][AIVY][AGLV][stv][ACFTV]x[LPTV][GK][CFLV][PRS][ilv][DPRS][LT][EKP][AGLTV][ILV][AFVY]
Conservation:-1.8370.303-0.856-0.230-0.718-0.771-0.4901.2820.0410.1850.274-0.3281.2791.072-1.0862.124-0.243
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1kvk_A_2301kvk   A231247QILLTNTKVPRSTKALVEEEEEE------HHHHHxbbxbbavxwbbaaaaa
1nh2_A_1531nh2   A160176IVGSCDVKFPIRLEGLAEEEEEE-SS-B-HHHHHbbbbbbalbxbxaaaaa
1nh2_A_661nh2   A7086IVATVTLGCRLDLKTVAEEEEEE-SS---HHHHHbbbbbbavbxbxaaaaa
1oj4_A_1691oj4   A169185WYLVAHPGVSIPTPVIFEEEEE--S----HHHHHxbbbbbagxxxxaaaaa
1uek_A_1521uek   A153169PAVVFFPGLRVPTPLVYEEEEEE------HHHHHwbbbbbavbxbpaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nh2_A_1531nh2   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE V - 161
1oj4_A_1691oj4   A     MSESELENOMETHIONINE H - 174
1oj4_A_1691oj4   A     MSESELENOMETHIONINE S - 178
1oj4_A_1691oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 178
1oj4_A_1691oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER I - 179
1oj4_A_1691oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 181
1oj4_A_1691oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 181
1oj4_A_1691oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL P - 182
1oj4_A_1691oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL F - 185
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oj4_A_1691oj4   A AC2CDM BINDING SITE FOR CHAIN AT - 181

Clusters included in this Subclass
CLUSTER: EH.6.50