ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.25.1

Subclass Accession number: 7550
Subclass: 6.25.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 21.0 +/- 21.0
Average RMSD (Å) : 1.200 +/- 0.520

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	phXXpXppXp
(φψ)-conformation:	bbpaaaapaa

Pattern:	[FY]	[ILY]	[FTV]	[SY]	[KY]	[AL]	[SW]	[CDS]	[ST]	x	[EH]	[EKR]	[KP]	[EN]	[LY]	[KV]	[KR]	[GRT]	[ACL]	x	[EQ]	[KLT]	[IT]	[LT]	[DKR]	[ADS]	[LT]
Conservation:	2.408	-0.417	-1.032	-0.474	-0.122	-0.442	1.153	-0.827	0.781	-0.150	1.537	0.198	0.972	0.986	-0.039	-0.743	1.414	-1.340	-0.622	-1.442	1.414	-1.340	-0.090	-0.308	-0.520	-0.725	-0.230

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1afs_A_80	1afs	A	80	106	FYTSKLWSTFHRPELVRTCLEKTLKST	EEEEEE-GGG-STTTHHHHHHHHHHHH	bbbbbxxaaaaxaaaaaaaaaaaaaaa
1ah4_*_73	1ah4	-	73	99	FIVSKLWCTDHEKNLVKGACQTTLRDL	EEEEEE-GGG-SGGGHHHHHHHHHHHH	bbbbbxxaaaapaaaaaaaaaaaaaaa
1iyk_A_352	1iyk	A	354	380	YLFYYASDSFEKPNYKKRLNELITDAL	EEEEEEETTTTSTTHHHHHHHHHHHHH	bxFxbbbaaaaxaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1afs_A_80	1afs	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	K - 84
1afs_A_80	1afs	A	TESTESTOSTERONE	K - 84
1afs_A_80	1afs	A	TESTESTOSTERONE	W - 86
1ah4_*_73	1ah4	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	K - 77
1iyk_A_352	1iyk	A	MIM[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL] PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE	Y - 354

Clusters included in this Subclass