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Information on SUBCLASS 6.39.1
Subclass Accession number: 1504
Subclass: 6.39.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.1 (>75 %)  2.1.1 (>75 %)  2.7 (>75 %)  2.7.7 (>75 %)  2.7.7.18
GO : GO:0003676 (>50 %)  GO:0003677 (>50 %)  GO:0004515 (>50 %)  GO:0008168 (>75 %)  GO:0008170 (>75 %)  GO:0008757 (>75 %)  GO:0009008 (>50 %)  GO:0016741 (>75 %)  GO:0016772 (>75 %)  GO:0016779 (>75 %)  
SCOP : 52373 (>75 %)  52374 (>75 %)  52397 (>75 %)  53334 (>75 %)  53335 (>75 %)  53377 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 33.3 +/- 16.9
Average RMSD (Å) : 0.467 +/- 0.115

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hGpFcPhpph
(φψ)-conformation: bealbwpbaa
Pattern: x[AGL][IL][AF][CG][G][ST][F][DN][P][IPV][HT][NY][GM][H][L]x[MP][AFV][EN]x[ALV]x[DNY]x
Conservation:-0.780-1.0450.211-0.348-0.2171.6070.1521.6070.4742.084-0.6740.082-0.097-0.5032.5620.652-0.727-0.290-0.8330.088-0.833-0.621-0.992-0.674-0.886
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k4k_A_51k4k   A529QALFGGTFDPVHYGHLKPVETLANLEEEEEE--TT--HHHHHHHHHHHHHbbbbbealbwxbaaaaaaaaaaaaa
1kam_A_31kam   A428IGIFGGTFDPPHNGHLLMANEVLYQEEEEEE--SS--HHHHHHHHHHHHHbxxbxealbwwbaaaaaaaaaaaaa
1nup_A_51nup   A832VLLACGSFNPITNMHLRMFEVARDHEEEEEE--TT--HHHHHHHHHHHHHbbbbbealbwxbaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k4k_A_51k4k   A     XEXENON L - 7
1k4k_A_51k4k   A     XEXENON F - 8
1k4k_A_51k4k   A     XEXENON G - 9
1k4k_A_51k4k   A     XEXENON F - 12
1k4k_A_51k4k   A     XEXENON V - 15
1k4k_A_51k4k   A     XEXENON H - 16
1k4k_A_51k4k   A     XEXENON H - 19
1k4k_A_51k4k   A     XEXENON L - 20
1nup_A_51nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE C - 12
1nup_A_51nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE G - 13
1nup_A_51nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE S - 14

Clusters included in this Subclass
CLUSTER: EH.5.225