ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.13.1

Subclass Accession number: 3490
Subclass: 8.13.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 75.8 +/- 1.1
Average RMSD (Å) : 0.200 +/- 0.082

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	hSHRSGETEDXX
(φψ)-conformation:	pbpbabbbapaa

Pattern:	[GST]	[ATV]	[MV]	[IV]	[S]	[H]	[R]	[S]	[G]	[E]	[T]	[E]	[D]	[ACT]	[FTY]	[I]	[A]	[D]	[L]	[AV]	[V]	[AG]
Conservation:	-1.476	-1.477	-0.673	-0.276	0.012	2.339	0.594	0.012	1.176	0.594	0.594	0.594	1.176	-1.299	-1.260	0.012	0.012	1.176	0.012	-1.139	0.012	-0.714

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e9i_A_364	1e9i	A	364	385	TAVISHRSGETEDATIADLAVG	EEEEE--SS--S--HHHHHHHH	bbbxbxbabbbapaaaaaaaaa
1oep_A_366	1oep	A	366	387	SVMVSHRSGETEDTYIADLVVA	EEEEE--SB--S--HHHHHHHH	bbbxbxbabbbaxaaaaaaaaa
1one_A_368	1one	A	368	389	GVMVSHRSGETEDTFIADLVVG	EEEEE--SB--S--HHHHHHHH	xbbxbxbabbbaxaaaaaaaaa
1pdz_*_367	1pdz	-	367	388	GTMVSHRSGETEDCFIADLVVG	EEEEE--SS--S--HHHHHHHH	bbbxbxbaxxbaxaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1oep_A_366	1oep	A	ZNZINC ION	H - 371
1oep_A_366	1oep	A	EDO1,2-ETHANEDIOL	D - 383
1one_A_368	1one	A	PEPPHOSPHOENOLPYRUVATE	S - 372
1one_A_368	1one	A	PAG2-PHOSPHO-D-GLYCERIC ACID	S - 372
1one_A_368	1one	A	PEPPHOSPHOENOLPYRUVATE	H - 373
1one_A_368	1one	A	PAG2-PHOSPHO-D-GLYCERIC ACID	H - 373
1one_A_368	1one	A	MGMAGNESIUM ION	R - 374
1one_A_368	1one	A	PEPPHOSPHOENOLPYRUVATE	R - 374
1one_A_368	1one	A	PAG2-PHOSPHO-D-GLYCERIC ACID	R - 374
1one_A_368	1one	A	PEPPHOSPHOENOLPYRUVATE	S - 375
1one_A_368	1one	A	PAG2-PHOSPHO-D-GLYCERIC ACID	S - 375
1one_A_368	1one	A	PEPPHOSPHOENOLPYRUVATE	G - 376
1one_A_368	1one	A	PAG2-PHOSPHO-D-GLYCERIC ACID	G - 376
1pdz_*_367	1pdz	*	PGA2-PHOSPHOGLYCOLIC ACID	S - 371
1pdz_*_367	1pdz	*	PGA2-PHOSPHOGLYCOLIC ACID	H - 372
1pdz_*_367	1pdz	*	PGA2-PHOSPHOGLYCOLIC ACID	R - 373
1pdz_*_367	1pdz	*	PGA2-PHOSPHOGLYCOLIC ACID	S - 374
1pdz_*_367	1pdz	*	PGA2-PHOSPHOGLYCOLIC ACID	G - 375

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oep_A_366	1oep	A	AC3SO4 BINDING SITE FOR CHAIN A	R - 372
1oep_A_366	1oep	A	AC3SO4 BINDING SITE FOR CHAIN A	S - 373

Clusters included in this Subclass

CLUSTER: EH.8.58