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Information on SUBCLASS 4.1.5
Subclass Accession number: 6240
Subclass: 4.1.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 11.5 +/- 14.7
Average RMSD (Å) : 0.413 +/- 0.167

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XpXXpXXX
(φψ)-conformation: bbaaalbb
Pattern: xx[cdehknqrst]xx[cdeknqrst][degknqrst][adegknqrst]xx
Conservation:0.096-0.7411.800-1.070-0.1381.1890.482-0.151-1.5370.070
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a06_*_341a06   -3746AEDKRTQKLVEEETTT--EEbbxaaavxxb
1a4s_A_381a4s   A4049VFEPATGRVLEE-TTT--EEbbbaaavxxa
1bxs_A_361bxs   A3948VFNPATEEKLEE-TTT--EEbbbaaavxxa
1c39_A_621c39   A6675QIQKSNGKETEEETTTTEEEbbxaaalxbb
1c5e_A_361c5e   A3847MLDTSSRKLVEE-TTT--EEbxxaaavxxb
1cru_A_1121cru   A120129TYNKSTDTLEEEETTTTEEEbxbaaalbbb
1dp4_A_3761dp4   A380389DMDPETGAFREE-TTT--EEbxxaaavxbb
1e9g_A_1061e9g   A106113.SHPETKAV..EETTTTEE..xxaaalbx.
1euh_A_191euh   A2231IYEPASGAELEE-TTT--EEbbxaaavxxa
1fn9_A_481fn9   A4958VVCMHCLGVVEEETTTTEEEbbxaaavxxa
1gxs_A_241gxs   A3039TIDDNNGRALEEETTTTEEExabaaavbbb
1hs6_A_161hs6   A2635SVDFTRRTLTEEETTTTEEEbxxaaalbbb
1ie9_A_2791ie9   A279287.FTMDDMSWT.EETTTTEEE.xbaaNvbxx
1jks_A_251jks   A3039CREKSTGLQYEEETTT--EEbbxaaavxxb
1khi_A_511khi   A5968STSAATGQHREE-TTT--EEbbxaaavxxb
1ksi_A_2541ksi   A262271IYDLEKHKSREEETTTTEEEbxxaaalbxb
1mq4_A_1461mq4   A150159AREKQSKFILEEETTT--EEbbxaaavxxb
1mxg_A_1161mxg   A118127EWNPFVGDYTEEETTTTEEEbxbaaavbxb
1n8j_A_1101n8j   A110117.MREDEGLA..EETTTTEE..xxaaavbx.
1nu0_A_141nu0   A1928VGQRITGTAREEETTTTEEEbbbaaavbbb
1nuy_A_11801nuy   A11851194MLDPAIGEFIEEETTTTEEEbxxaaavbxb
1o6l_A_1641o6l   A169178VREKATGRYYEEETTT--EEbbxaaavxxb
1q1r_A_2141q1r   A218227EMSTDQQKVTEE-TTT--EEbbxaaalbxa
1q41_A_701q41   A7382AKLCDSGELVEEETTT--EEbbxaaavxxb
1qmv_A_1181qmv   A118125.LKTDEGIA..EETTTTEE..xxaaavbx.
1rdq_E_561rdq   E6069VKHKESGNHYEEETTT--EEbbxaaavxxb
1tie_*_1151tie   -119128QVSDQLHSYKEEETTTTEEExabaaalbbx
1uj2_A_1071uj2   A111120VYDFVSHSRKEEETTTTEEEbbbaaalbxx
1uu3_A_951uu3   A99108ARELATSREYEEETTT--EEbbxaaavxxb
1vjl_A_31vjl   A1019ALDRVSNTPVEE-TTT--EEbxpaaalbwb
1vps_A_1441vps   A144153PTDTVNTKGIEEETTTTEEExabaaavbeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE Q - 66
1c39_A_621c39   A     MNMANGANESE (II) ION Q - 68
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE Q - 68
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE N - 71
1c39_A_621c39   A     MNMANGANESE (II) ION K - 73
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE K - 73
1c39_A_621c39   A     MNMANGANESE (II) ION T - 75
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE T - 75
1c39_A_621c39   A     NAGN-ACETYL-D-GLUCOSAMINE R - 79
1c39_A_621c39   A     NAGN-ACETYL-D-GLUCOSAMINE N - 81
1c39_A_621c39   A     NAGN-ACETYL-D-GLUCOSAMINE E - 82
1cru_A_1121cru   A     GOLGLYCEROL D - 126
1fn9_A_481fn9   A     ZNZINC ION C - 51
1fn9_A_481fn9   A     ZNZINC ION M - 52
1fn9_A_481fn9   A     ZNZINC ION H - 53
1fn9_A_481fn9   A     ZNZINC ION C - 54
1fn9_A_481fn9   A     ZNZINC ION L - 55
1fn9_A_481fn9   A     ZNZINC ION G - 56
1fn9_A_481fn9   A     ZNZINC ION V - 58
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE T - 30
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE D - 32
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE D - 33
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE N - 35
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE G - 36
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE R - 37
1gxs_A_241gxs   A     NAGN-ACETYL-D-GLUCOSAMINE A - 38
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION R - 31
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION T - 33
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION T - 35
1ie9_A_2791ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL F - 279
1ie9_A_2791ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL W - 286
1ksi_A_2541ksi   A     MNMANGANESE (II) ION Y - 275
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE L - 282
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE V - 284
1mq4_A_1461mq4   A     ADPADENOSINE-5'-DIPHOSPHATE V - 147
1mq4_A_1461mq4   A     ADPADENOSINE-5'-DIPHOSPHATE A - 160
1mq4_A_1461mq4   A     MGMAGNESIUM ION K - 162
1mq4_A_1461mq4   A     ADPADENOSINE-5'-DIPHOSPHATE K - 162
1mxg_A_1161mxg   A     ACRACARBOSE E - 118
1mxg_A_1161mxg   A     ACRACARBOSE F - 122
1mxg_A_1161mxg   A     ACRACARBOSE T - 129
1mxg_A_1161mxg   A     ACRACARBOSE D - 130
1nu0_A_141nu0   A     MSESELENOMETHIONINE V - 17
1nu0_A_141nu0   A     MSESELENOMETHIONINE A - 18
1nu0_A_141nu0   A     MSESELENOMETHIONINE V - 19
1nu0_A_141nu0   A     MSESELENOMETHIONINE G - 20
1nu0_A_141nu0   A     MSESELENOMETHIONINE Q - 21
1nu0_A_141nu0   A     MSESELENOMETHIONINE R - 22
1nu0_A_141nu0   A     MSESELENOMETHIONINE G - 25
1nu0_A_141nu0   A     MSESELENOMETHIONINE T - 26
1nu0_A_141nu0   A     MSESELENOMETHIONINE A - 27
1nu0_A_141nu0   A     MSESELENOMETHIONINE L - 30
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 164
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 166
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 179
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 181
1o6l_A_1641o6l   A     MNMANGANESE (II) ION K - 181
1o6l_A_1641o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 183
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME V - 70
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME A - 83
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME K - 85
1qmv_A_1181qmv   A     NCBN-CARBAMOYL-ALANINE L - 118
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE R - 56
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE R - 56
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE V - 57
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE V - 57
1rdq_E_561rdq   E     GOLGLYCEROL K - 63
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE A - 70
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE A - 70
1rdq_E_561rdq   E     PO4PHOSPHATE ION K - 72
1rdq_E_561rdq   E     MGMAGNESIUM ION K - 72
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE K - 72
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE K - 72
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE L - 74
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE L - 74
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE Y - 112
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE D - 113
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE F - 114
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE H - 117
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE S - 118
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE T - 95
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE V - 96
1uu3_A_951uu3   A     GOLGLYCEROL R - 106
1uu3_A_951uu3   A     GOLGLYCEROL E - 107
1uu3_A_951uu3   A     GOLGLYCEROL Y - 108
1uu3_A_951uu3   A     GOLGLYCEROL A - 109
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE A - 109
1uu3_A_951uu3   A     GOLGLYCEROL K - 111
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE K - 111
1uu3_A_951uu3   A     GOLGLYCEROL I - 112
1uu3_A_951uu3   A     GOLGLYCEROL L - 113
1vjl_A_31vjl   A     MSESELENOMETHIONINE K - 3
1vjl_A_31vjl   A     MSESELENOMETHIONINE V - 6
1vjl_A_31vjl   A     MSESELENOMETHIONINE K - 7
1vjl_A_31vjl   A     MSESELENOMETHIONINE T - 8
1vjl_A_31vjl   A     MSESELENOMETHIONINE L - 9
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o6l_A_1641o6l   A AC1ANP BINDING SITE FOR CHAIN AA - 179
1o6l_A_1641o6l   A AC1ANP BINDING SITE FOR CHAIN AK - 181
1uu3_A_951uu3   A AC1LY4 BINDING SITE FOR CHAIN AA - 109
1uu3_A_951uu3   A AC1LY4 BINDING SITE FOR CHAIN AK - 111

Clusters included in this Subclass
CLUSTER: HA.4.70
CLUSTER: HA.4.88
CLUSTER: HA.5.22