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Information on SUBCLASS 4.1.6
Subclass Accession number: 6241
Subclass: 4.1.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 30

Average sequence ID (%) : 11.3 +/- 16.2
Average RMSD (Å) : 0.527 +/- 0.153

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hpXpXXXX
(φψ)-conformation: bbaaalbb
Pattern: x[acfgilvy][dhknqrs]x[dekqrsy][adeknst][ADGKQRS]xxx
Conservation:-1.098-0.3951.416-0.1210.6090.4911.615-0.711-1.264-0.543
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b88_A_631b88   A6574FFNKREKKLSEEETTTTEEEbbbaaavbbb
1c9o_A_21c9o   A817WFNNEKGYGFEEETTTTEEEbbxaaavbbb
1csp_*_21csp   -817WFNSEKGFGFEEETTTTEEEbbxaaavbeb
1d2k_A_3311d2k   A333342TELEDIAASYEEETTTTEEEbbbaaalbbb
1edq_A_5011edq   A504513VFKPSTGDLIEEETTTTEEEbbbaaavxbb
1fo0_A_621fo0   A6574NFQKPKSSIGEEEGGGTEEEbxbaaalbbx
1g72_A_3511g72   A353362KVDLKTGTPVEE-TTT-SEEebxaaavbxx
1ggx_A_251ggx   A3443EGRPYEGHNTEEETTTTEEEbbbaaavbbb
1gqe_A_3221gqe   A325334SYVLDDSRIKEEEGGGTEEEbbxaaalbbb
1grj_*_911grj   -94103VLNLDSDEEQEEETTTTEEEbbxaaavxbb
1h4i_A_3581h4i   A360369SVDLKTGQPVEE-TTT--EEbbxaaavxxx
1i7z_B_461i7z   B5059WINTYTGEPTEE-TTT--EEbbxaaavxxb
1itv_A_1191itv   A122130RFDVKAQMV.EEETTTTEE.xbxaaalbb.
1jla_A_4381jla   A445454AANRETKLGKEE-TTT--EEbbxaaavxbb
1kex_A_721kex   A7281AISKETKKKYEE-TTT--EEbbxaaavxbb
1kij_A_2021kij   A205214FQDRQHGKEEEEEGGGTEEEbbbaaalbbb
1koi_A_521koi   A5968HYDPKTQDTFEE-TTT--EEbbxaaavpbb
1kv9_A_3481kv9   A350359KVDLATGRPVEE-TTT--EEebxaaavbxx
1lcy_A_821lcy   A8998AVDPVADIATEEETTTTEEEbbbaaalbbb
1lml_*_5061lml   -514523QCDTATRTYSEEETTTTEEEbbxaaalbbb
1lrw_A_3581lrw   A360369EVQLDTGLPVEE-TTT--EEbbxaaavxxx
1lw3_A_2691lw3   A272281WIHPESQATIEE-TTT--EEbbxaaavxbb
1mjc_*_51mjc   -1120WFNADKGFGFEEETTTTEEEbbxaaavbbb
1mlb_B_1971mlb   B200209VAHPASSTKVEEETTTTEEEbbbaaavxbb
1mou_A_251mou   A3443KGRPYEGEQTEEETTTTEEEbebaaavbbb
1nyc_A_521nyc   A5766FIDTAHQRIKEEETTTTEEEbbxaaalbbb
1oga_D_1591oga   D161170LDMRSMDFKSEEEGGGTEEEbbbaaalbbb
1tcr_A_621tcr   A6574EFSKSNSSFHEEETTTTEEEbxbaaalbbx
1uis_A_221uis   A3140DGNPYMGTQTEEETTTTEEEbbbaaavbbb
3lkf_A_163lkf   A2534ADSDKFKISQEEETTTTEEEbbbaaalbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL W - 8
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL F - 9
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 10
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 11
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 12
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 13
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Y - 15
1ggx_A_251ggx   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID N - 42
1ggx_A_251ggx   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID T - 43
1ggx_A_251ggx   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID V - 44
1gqe_A_3221gqe   A     MSESELENOMETHIONINE R - 324
1gqe_A_3221gqe   A     MSESELENOMETHIONINE Y - 326
1gqe_A_3221gqe   A     MSESELENOMETHIONINE L - 328
1gqe_A_3221gqe   A     MSESELENOMETHIONINE I - 333
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 55
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 57
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 59
1koi_A_521koi   A     NMONITROGEN MONOXIDE H - 59
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 68
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 69
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 70
1koi_A_521koi   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 72
1mou_A_251mou   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID K - 34
1mou_A_251mou   A     IODIODIDE ION K - 34
1mou_A_251mou   A     IODIODIDE ION G - 35
1mou_A_251mou   A     IODIODIDE ION R - 36
1mou_A_251mou   A     IODIODIDE ION E - 41
1mou_A_251mou   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID Q - 42
1mou_A_251mou   A     IODIODIDE ION Q - 42
1mou_A_251mou   A     IODIODIDE ION T - 43
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE E - 65
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE F - 66
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE S - 67
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE S - 69
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE N - 70
1tcr_A_621tcr   A     FUCFUCOSE N - 70
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE S - 72
1tcr_A_621tcr   A     NAGN-ACETYL-D-GLUCOSAMINE H - 74
1uis_A_221uis   A     CACALCIUM ION D - 31
1uis_A_221uis   A     CACALCIUM ION G - 32
1uis_A_221uis   A     CACALCIUM ION N - 33
1uis_A_221uis   A     CACALCIUM ION T - 38
1uis_A_221uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE Q - 39
1uis_A_221uis   A     CACALCIUM ION Q - 39
1uis_A_221uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE T - 40
1uis_A_221uis   A     CACALCIUM ION T - 40
1uis_A_221uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE M - 41
1uis_A_221uis   A     CACALCIUM ION M - 41

Clusters included in this Subclass
CLUSTER: HA.3.53
CLUSTER: HA.4.42
CLUSTER: HA.5.25
CLUSTER: HA.6.57