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Information on SUBCLASS 5.10.1
Subclass Accession number: 6386
Subclass: 5.10.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 8.1 +/- 11.3
Average RMSD (Å) : 0.993 +/- 0.383

Consensus geometry
d (Å): 7 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXpXhXh
(φψ)-conformation: bbaabppbb
Pattern: [citvwy]xxxx[degknqs][cdhkrst][adegnpt]xx[filpvwy]
Conservation:0.682-0.913-1.423-1.288-0.0081.215-0.7681.4110.928-0.1230.287
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amw_*_1311amw   -137147ISKSNDDEQYIEEE-TTS--EEbbbxaabxxbb
1aqk_L_361aqk   L3848YQHLPGTAPKLEEE-TTS--EEbbbbaabxxbx
1g0u_H_1731g0u   H176186CVMEIGKDAEYEEEESSS--EEbbbxaabxxbx
1g9g_A_3011g9g   A302312WGGGIDSTWSWEEEESSS--EEbbbxaabxbbb
1h6l_A_701h6l   A7282ITTNKKSGLAVEEEETTS--EEbbbbaabxxbb
1iys_A_2441iys   A249259VIWPENHAPLVEEE-SSS--EEbbbxaabxpbb
1kqw_A_481kqw   A5262KTLSTFRNYEVEEE-SS--EEEbbbbaabbbbb
1m2k_A_1171m2k   A121131VVRCTSCNNSFEEEESSSS-EEbbbxaaxxbbb
1m2o_A_6281m2o   A630640TSFSMEDDPQPEEE-SSS--EEbbbbaabxpbx
1nbf_A_3261nbf   A331341YIQCKEVDYRSEEEESSS--EEbbbxaabxbbb
1nc7_A_381nc7   A4353TFLFEDSKPVVEEEESSS--EEbbbbaabxxbb
1nd6_A_2921nd6   A299309YRNETQHEPYPEE--TTS--EEbxabaabxpxx
1nww_A_521nww   A5262MYQNMPLPPAYEEEETTS--EEbbbxaabxxbb
1qy5_A_2061qy5   A212222TSKHNNDTQHIEEE-TTS--EEbbbbaabxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amw_*_1311amw   *     ADPADENOSINE-5'-DIPHOSPHATE S - 138
1h6l_A_701h6l   A     CACALCIUM ION K - 76
1h6l_A_701h6l   A     PO4PHOSPHATE ION K - 76
1kqw_A_481kqw   A     RTLRETINOL T - 51
1kqw_A_481kqw   A     RTLRETINOL K - 52
1kqw_A_481kqw   A     RTLRETINOL T - 53
1kqw_A_481kqw   A     RTLRETINOL L - 54
1kqw_A_481kqw   A     RTLRETINOL S - 55
1kqw_A_481kqw   A     RTLRETINOL F - 57
1kqw_A_481kqw   A     RTLRETINOL R - 58
1kqw_A_481kqw   A     RTLRETINOL N - 59
1kqw_A_481kqw   A     RTLRETINOL Y - 60
1kqw_A_481kqw   A     RTLRETINOL V - 62
1kqw_A_481kqw   A     RTLRETINOL F - 64
1m2k_A_1171m2k   A     ZNZINC ION C - 124
1m2k_A_1171m2k   A     ZNZINC ION T - 125
1m2k_A_1171m2k   A     ZNZINC ION S - 126
1m2k_A_1171m2k   A     ZNZINC ION C - 127
1m2k_A_1171m2k   A     ZNZINC ION N - 128
1m2k_A_1171m2k   A     ZNZINC ION N - 129
1nc7_A_381nc7   A     MSESELENOMETHIONINE I - 40
1nc7_A_381nc7   A     MSESELENOMETHIONINE R - 41
1nc7_A_381nc7   A     MSESELENOMETHIONINE I - 42
1nc7_A_381nc7   A     MSESELENOMETHIONINE T - 43
1nc7_A_381nc7   A     MSESELENOMETHIONINE F - 44
1nc7_A_381nc7   A     MSESELENOMETHIONINE L - 45
1nc7_A_381nc7   A     MSESELENOMETHIONINE F - 46
1nc7_A_381nc7   A     MSESELENOMETHIONINE S - 49
1nc7_A_381nc7   A     MSESELENOMETHIONINE K - 50
1nc7_A_381nc7   A     MSESELENOMETHIONINE P - 51
1nc7_A_381nc7   A     MSESELENOMETHIONINE I - 58
1nd6_A_2921nd6   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 299
1nd6_A_2921nd6   A     NAGN-ACETYL-D-GLUCOSAMINE R - 300
1nd6_A_2921nd6   A     NAGN-ACETYL-D-GLUCOSAMINE N - 301
1nd6_A_2921nd6   A     NAGN-ACETYL-D-GLUCOSAMINE E - 302
1nd6_A_2921nd6   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 308
1nww_A_521nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID M - 52
1nww_A_521nww   A     HPNHEPTANAMIDE Y - 53
1nww_A_521nww   A     HPNHEPTANAMIDE N - 55
1nww_A_521nww   A     HPNHEPTANAMIDE L - 58
1nww_A_521nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 62
1qy5_A_2061qy5   A     NECN-ETHYL-5'-CARBOXAMIDO ADENOSINE S - 213
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h6l_A_701h6l   A AC9PRODUCT PO4 502 BINDING SITE FOR CHAIN AK - 76

Clusters included in this Subclass
CLUSTER: HA.4.188
CLUSTER: HA.4.250
CLUSTER: HA.5.77
CLUSTER: HA.6.120
CLUSTER: HA.6.99
CLUSTER: HA.7.45