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Information on SUBCLASS 5.37.1
Subclass Accession number: 6417
Subclass: 5.37.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.3 +/- 16.0
Average RMSD (Å) : 0.767 +/- 0.306

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: phXXccXXX
(φψ)-conformation: bbppglpbb
Pattern: [EY][LVY]xx[DGN][GK][AR][CIT]x[EPS]
Conservation:0.9230.005-1.5000.1040.8421.1810.604-0.162-1.835-0.162
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gzq_A_941gzq   A103112ELHSGGAIVSEE-TTS-EEEbxxxggxbxb
1n8y_C_5321n8y   C532541EYVSDKRCLPEE-SSSB-EEbbxbvlbxbx
1vjp_A_2891vjp   A298307YVSFNGATDEEE-GGG-EEEbbbxlvxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gzq_A_941gzq   A     D12DODECANE F - 94
1gzq_A_941gzq   A     D12DODECANE I - 96
1gzq_A_941gzq   A     TWTDOCOSANE I - 96
1gzq_A_941gzq   A     TWTDOCOSANE Q - 97
1gzq_A_941gzq   A     TWTDOCOSANE G - 98
1gzq_A_941gzq   A     TWTDOCOSANE I - 99
1gzq_A_941gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE A - 100
1gzq_A_941gzq   A     TWTDOCOSANE A - 100
1gzq_A_941gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE G - 101
1gzq_A_941gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE C - 102
1gzq_A_941gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE F - 113
1gzq_A_941gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE L - 114
1gzq_A_941gzq   A     TWTDOCOSANE L - 114
1gzq_A_941gzq   A     TWTDOCOSANE R - 115
1gzq_A_941gzq   A     TWTDOCOSANE G - 116
1gzq_A_941gzq   A     TWTDOCOSANE A - 117
1gzq_A_941gzq   A     D12DODECANE L - 118
1gzq_A_941gzq   A     TWTDOCOSANE L - 118
1vjp_A_2891vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 290
1vjp_A_2891vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 315

Clusters included in this Subclass
CLUSTER: HA.6.198