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Information on SUBCLASS 5.5.1
Subclass Accession number: 721
Subclass: 5.5.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 8.9 +/- 11.6
Average RMSD (Å) : 0.706 +/- 0.213

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXXXpXX
(φψ)-conformation: bbapglpbb
Pattern: xxxxxx[gks][adgknr][ehkqrsty]xxx
Conservation:-0.365-0.562-0.274-0.258-0.297-0.4342.4921.3430.597-0.841-0.512-0.891
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bfg_*_211bfg   -2233RLYCKNGGFFLREEEETTTTEEEEbbxxaxgvxxxb
1dja_*_2301dja   -235246SGQAITYASRNDEEE-SSTT-EEExbbxabllxbbb
1f1u_A_2411f1u   A245256PGRHGVSNAFYLEEE-STT--EEEwbbxaxvvxxbb
1h8u_A_921h8u   A93104VALCTRGGYWRREEEETTTT-EEEbbbxabgvxxbx
1jmx_A_4621jmx   A467478IATLADGGQTGEEEEETTT--EEEbbbpaxvvxxbb
1jov_A_311jov   A3344AKISLQGAQLISEEEETBTTEEEEbbbxaxvlbpab
1k32_A_4771k32   A481492HVYDMEGRKIFAEEEETTTTEEEEbbbxaxglbbbx
1k8k_A_2541k8k   A257268TGINAISKKEFSEEE-TTT--EEEbbbxabglbxbb
1lur_A_10151lur   A10161027ATLLPFGATLAKEEEETBTTEEEEbbbbwxvlxxab
1m2r_A_971m2r   A100111IVRDQHSKTPSLEEE-TTT--EEEbbxpabNvxxbx
1n0u_A_3791n0u   A385396MVPTSDKGRFYAEEEBSSTT-EEEbbxbaxlvxbbx
1nsz_A_241nsz   A2536ISFTNLGARIVDEEEETBTTEEEEbbbbaxvlbxab
1o80_A_401o80   A4253IATMKKKGEKRCEEEESSTT-EEEbbbxaxUlxxbx
1pgu_A_4581pgu   A460471AVGLEEGNTIQVEEEETTTS-EEExbxxabvlxbbb
1qfm_A_1511qfm   A154165KFMKVDGAKELPEEEETTTTEEEEbbbxaxvlxxba
1snz_A_301snz   A3142VDIISWGCTITAEEEETBTTEEEEbbbbaxvlxxab
1tgo_A_4311tgo   A431442YDVAPQVGHKFCEEE-TTT--EEEbbbxabvlxbbx
1vps_A_2771vps   A288299WRVTRNYDVHHWEEE-SSTT-EEEbbbxabllxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f1u_A_2411f1u   A     MW2MANGANESE DIHYDRATE ION H - 248
1f1u_A_2411f1u   A     MW2MANGANESE DIHYDRATE ION S - 251
1f1u_A_2411f1u   A     MW2MANGANESE DIHYDRATE ION Y - 257
1jmx_A_4621jmx   A     NINICKEL (II) ION T - 476
1jmx_A_4621jmx   A     NINICKEL (II) ION G - 477
1jov_A_311jov   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE T - 32
1jov_A_311jov   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE S - 44
1jov_A_311jov   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE K - 46
1m2r_A_971m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE F - 113
1m2r_A_971m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE E - 114
1qfm_A_1511qfm   A     GOLGLYCEROL V - 151
1qfm_A_1511qfm   A     GOLGLYCEROL T - 152
1qfm_A_1511qfm   A     CSWCYSTEINE-S-DIOXIDE I - 153
1qfm_A_1511qfm   A     GOLGLYCEROL L - 168
1qfm_A_1511qfm   A     GOLGLYCEROL E - 169
1qfm_A_1511qfm   A     GOLGLYCEROL R - 170
1qfm_A_1511qfm   A     GOLGLYCEROL V - 171
1vps_A_2771vps   A     SIAO-SIALIC ACID R - 289
1vps_A_2771vps   A     SIAO-SIALIC ACID T - 291
1vps_A_2771vps   A     SIAO-SIALIC ACID N - 293
1vps_A_2771vps   A     SIAO-SIALIC ACID V - 296
1vps_A_2771vps   A     GALD-GALACTOSE V - 296
1vps_A_2771vps   A     SIAO-SIALIC ACID H - 298
1vps_A_2771vps   A     GALD-GALACTOSE H - 298

Clusters included in this Subclass
CLUSTER: HA.5.27
CLUSTER: HA.5.80
CLUSTER: HA.6.116
CLUSTER: HA.6.71
CLUSTER: HA.7.21