Information on SUBCLASS 5.5.3 |
Subclass Accession number: 6376
Subclass: 5.5.3 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 16.7 +/- 16.4 Average RMSD (Å) : 0.900 +/- 0.294 Consensus geometry
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Consensus Sequence: | XcXppXphX |
(φψ)-conformation: | bpaaalpba |
Pattern: | x | x | x | x | [DN] | x | [EKRY] | [ST] | [EG] | [ET] | [LV] | [AIKL] | x | x | x | [DENQ] | [AFI] | x | [IPY] |
Conservation: | -0.249 | -0.448 | -0.329 | -0.750 | 1.996 | -1.013 | -0.195 | 1.445 | 1.317 | 1.207 | 1.368 | -0.795 | -1.068 | -0.849 | -0.577 | 0.678 | -0.006 | -1.068 | -0.666 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1go4_A_81 | 1go4 | A | 86 | 104 | VVISNIESGEVLERWQFDI | EEEEETTT--EEEEEEEEE | bxbbxaaavxxabbxbbxb |
1i12_A_65 | 1i12 | A | 65 | 83 | MVIVDKRTETVAATGNIII | EEEEETTTTEEEEEEEEEE | bbxbxaaalbxabbbbbbb |
1pn2_A_106 | 1pn2 | A | 113 | 131 | SKSVDNKSGELIYSNEATY | EEEEETTT--EEEEEEEEE | bbbbxaaavxxabbbbxbb |
3sil_*_313 | 3sil | - | 314 | 332 | LYAHNLYSGEVKLIDDFYP | EEEEE-TTT--EEEEEEEE | bbbbxaaavxbbxabxaba |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i12_A_65 | 1i12 | A | IMDIMIDAZOLE | I - 82 |
1i12_A_65 | 1i12 | A | IMDIMIDAZOLE | I - 83 |
1i12_A_65 | 1i12 | A | IMDIMIDAZOLE | E - 84 |
Clusters included in this Subclass |
CLUSTER: HA.4.226 |
CLUSTER: HA.5.248 |
CLUSTER: HA.6.135 |