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Information on SUBCLASS 8.26.1
Subclass Accession number: 6542
Subclass: 8.26.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005515 (>50 %)  GO:0008092 (>50 %)  
SCOP : 50728 (>50 %)  50729 (>50 %)  50776 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 31.5 +/- 36.9
Average RMSD (Å) : 0.567 +/- 0.208

Consensus geometry
d (Å): 11 delta (°): 135-180 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hXXXpXXXPXXX
(φψ)-conformation: bpaabaabpabb
Pattern: [CG][LY][KN][IM][FY][EM]x[ADN][DT][KPR][KL][TV][P][KV][IK][GR][FG][CP]
Conservation:-0.053-0.0620.3710.3151.689-0.478-0.969-0.7490.043-0.382-0.6700.0393.142-0.618-0.998-0.285-0.4740.139
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ef1_A_2241ef1   A224241GLNIYEQNDRLTPKIGFPEEEEEETT-SSS-SEEEEebbbbxaabaabxabbbx
1h0j_A_201h0j   A2138CYKMFMVATPKVPVKRGCEEEEEETT-TTS--EEEExbbbbxaabaabpabbeb
1j19_A_2241j19   A224241GLNIYEHDDKLTPKIGFPEEEEEETT-SSS-SEEEEebbbbxaabaabxabbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ef1_A_2241ef1   A     MSESELENOMETHIONINE I - 227
1ef1_A_2241ef1   A     MSESELENOMETHIONINE Y - 228
1ef1_A_2241ef1   A     MSESELENOMETHIONINE E - 229
1ef1_A_2241ef1   A     MSESELENOMETHIONINE R - 233
1ef1_A_2241ef1   A     MSESELENOMETHIONINE L - 234
1ef1_A_2241ef1   A     MSESELENOMETHIONINE K - 237
1ef1_A_2241ef1   A     MSESELENOMETHIONINE I - 238
1h0j_A_201h0j   A     SDSDODECYL SULFATE V - 27
1h0j_A_201h0j   A     SDSDODECYL SULFATE A - 28
1h0j_A_201h0j   A     SDSDODECYL SULFATE T - 29
1h0j_A_201h0j   A     SDSDODECYL SULFATE P - 30
1h0j_A_201h0j   A     SDSDODECYL SULFATE K - 31
1h0j_A_201h0j   A     SDSDODECYL SULFATE V - 32
1h0j_A_201h0j   A     SDSDODECYL SULFATE P - 33
1h0j_A_201h0j   A     SDSDODECYL SULFATE V - 34
1h0j_A_201h0j   A     SDSDODECYL SULFATE K - 35
1h0j_A_201h0j   A     SDSDODECYL SULFATE R - 36
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0j_A_201h0j   A AC1SDS BINDING SITE FOR CHAIN AP - 30
1h0j_A_201h0j   A AC1SDS BINDING SITE FOR CHAIN AK - 31
1h0j_A_201h0j   A AC2SDS BINDING SITE FOR CHAIN AP - 33
1h0j_A_201h0j   A AC2SDS BINDING SITE FOR CHAIN AR - 36

Clusters included in this Subclass
CLUSTER: HA.7.117