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Information on SUBCLASS 0.1.16
Subclass Accession number: 5203
Subclass: 0.1.16 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 10.4 +/- 18.1
Average RMSD (Å) : 0.625 +/- 0.148

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 0-45 rho (°): 135-180
Consensus Sequence: XXXp
(φψ)-conformation: aabb
Pattern: xxxxxx[dgknst]
Conservation:-0.636-1.7770.4310.195-0.2690.9101.146
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aym_1_881aym   18894YNDQSFTHHHHSEEaaaaabb
1ek9_A_4091ek9   A414420ALNNALSHHHHTEEaaaaabI
1euh_A_4571euh   A460466SIEAMTTHHHHTEEaaaaabb
1f8f_A_2691f8f   A274280QGVDALGHHHHTEEaaaaaxx
1fcy_A_2561fcy   A274280RICTRYTHHHHTEEaaaaaxb
1g9g_A_5151g9g   A528534MWNNYSDHHHHSEEaaaaaxb
1gzd_A_351gzd   A3541RFNHFSLHHHHSEEaaaaabb
1iat_A_351iat   A3541RFNHFSLHHHHTEEaaaaabb
1lf6_A_4681lf6   A485491IDNLTYTHHHHHEEaaaaaxx
1nrl_A_2691nrl   A287293RFNTVFNHHHHTEEaaaaaxb
1o89_A_2211o89   A226232KVLAQMNHHHHTEEaaaaaxp
1qoz_A_1191qoz   A120126GAVSAVKHHHHHEEaaaaaxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aym_1_881aym   1     DAOLAURIC ACID W - 96
1ek9_A_4091ek9   A     MSESELENOMETHIONINE L - 412
1ek9_A_4091ek9   A     MSESELENOMETHIONINE L - 413
1ek9_A_4091ek9   A     MSESELENOMETHIONINE N - 416
1ek9_A_4091ek9   A     MSESELENOMETHIONINE L - 419
1f8f_A_2691f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 270
1f8f_A_2691f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 271
1f8f_A_2691f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 287
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE I - 260
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE L - 263
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE K - 264
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE A - 265
1fcy_A_2561fcy   A     LMUDODECYL-ALPHA-D-MALTOSIDE C - 267
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID L - 268
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID I - 270
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID L - 271
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID M - 272
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID R - 274
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID I - 275
1fcy_A_2561fcy   A     5646-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID R - 278
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 281
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER C - 284
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER Q - 285
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 288

Clusters included in this Subclass
CLUSTER: HE.0.9