ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 0.1.32

Subclass Accession number: 32
Subclass: 0.1.32

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.3 (>75 %)  4.2 (>75 %)  4.2.2 (>75 %)
GO : GO:0016829 (>75 %)  GO:0016835 (>75 %)  GO:0016837 (>75 %)
SCOP : 48207 (>75 %)  48230 (>75 %)  48234 (>75 %)

Number of loops: 3

Average sequence ID (%) : 3.7 +/- 7.5
Average RMSD (Å) : 0.700 +/- 0.100

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	XXhh
(φψ)-conformation:	aapb

Pattern:	x	[DER]	[LT]	x	[KNW]	[PQT]	x	[AIV]	[CIW]
Conservation:	-1.404	1.132	1.342	-0.643	-0.897	-0.136	-0.643	1.132	0.118

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8h_*_244	1a8h	-	246	254	YRTFWPHAW	HHHHGGGEE	aaaaaaapb
1cyo_*_65	1cyo	-	68	76	RELSKTFII	HHHHTTTEE	aaaaaaaxa
1q8f_A_189	1q8f	A	189	197	LDLTNQTVC	HHHHGGGEE	aaaaaaapx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cyo_*_65	1cyo	*	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 66
1cyo_*_65	1cyo	*	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 67
1cyo_*_65	1cyo	*	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 68
1cyo_*_65	1cyo	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 70
1cyo_*_65	1cyo	*	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 71
1cyo_*_65	1cyo	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 74
1q8f_A_189	1q8f	A	GOLGLYCEROL	L - 189

Clusters included in this Subclass

CLUSTER: HE.4.193