ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 15.1.1

Subclass Accession number: 6019
Subclass: 15.1.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.5 (>75 %)  3.5.1 (>75 %)  3.5.1.5
GO : GO:0005489 (>75 %)  GO:0005507 (>75 %)  GO:0009039 (>75 %)  GO:0016151 (>75 %)  GO:0016810 (>75 %)  GO:0016811 (>75 %)  GO:0046914 (>75 %)  GO:0046914 (>75 %)
SCOP : 49502 (>75 %)  49503 (>75 %)  49504 (>75 %)  51337 (>75 %)  51338 (>75 %)  51556 (>75 %)  51560 (>75 %)

Number of loops: 7

Average sequence ID (%) : 59.9 +/- 24.0
Average RMSD (Å) : 0.314 +/- 0.146

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	XAGhDccYhKXcDpRVIAH
(φψ)-conformation:	aaeaaallbpplpaapabb

Pattern:	[kmv]	[gpq]	[adg]	[aiv]	[av]	[knst]	[de]	[g]	[am]	x	[as]	[g]	[ail]	[ad]	[knq]	[dn]	[fy]	[lv]	[kt]	x	[dg]	[d]	[akst]	[r]	[v]	[i]	[a]	[fh]
Conservation:	-0.974	-1.205	-0.870	-0.492	-0.506	-0.941	0.702	1.897	-0.472	-1.346	-0.121	1.897	-0.859	-0.468	-0.537	0.387	1.318	-0.227	-0.397	-1.205	-0.155	1.897	-1.061	1.281	0.666	0.666	0.666	0.459

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1azc_A_56	1azc	A	56	83	KQGVATDGMNAGLAQDYVKAGDTRVIAH	HHHHHHHHHTT-GGGTTS-TT-TT-SEE	aaaaaaaaaaaeaaallbppvpaababb
1cc3_A_56	1cc3	A	56	83	MQGVVTDGMASGLDKDYLKPDDSRVIAH	HHHHHHHHHHH-GGGTTS-TT-TT-SEE	aaaaaaaaaaaeaaavlbppvpaaxabb
1cuo_A_56	1cuo	A	56	83	VGDVAKEGAHAGADNNFVTPGDKRVIAF	HHHHHHHHHTT-GGGTTS-TT-TT-SEE	aaaaaaaaaaaeaaallbxpvxaaxabb
1dyz_A_56	1dyz	A	56	83	KQAVATDGMGAGLAQDYVKAGDTRVIAH	HHHHHHHHHTT-GGGTTS-TT-TT-SEE	aaaaaaaaaaaeaaallbppvxaaxabb
1joi_*_56	1joi	-	56	83	MPGIASDGMAAGIDKNYLKEGDTRVIAH	HHHHHHHHHHH-GGGTTS-TT-TT--EE	aaaaaaaaaaaeaaallbxpvxaaxabb
1jzg_A_56	1jzg	A	56	83	MQGVVTDGMASGLDKDYLKPDDSRVIAH	HHHHHHHHHTT-GGGTTS-TT-TT--EE	bNaaaaaaaaaeaaallbxplpaaxabb
1rkr_A_56	1rkr	A	56	83	MQGAVNDGMAAGLDNNYVKKDDARVIAH	HHHHHHHHHHH-GGGTTS-TT-TT-SEE	aaaaaaaaaaaeaaallbpxvxaaxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	K - 70
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	D - 71
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	L - 73
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	K - 74
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	P - 75
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	D - 76
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	D - 77
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	S - 78
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	V - 80
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	I - 81
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	A - 82
1jzg_A_56	1jzg	A	RTB(2,2':6',2'-TERPYRIDINE)-(1,10-PHENANTHROLINE) RUTHENIUM (II)	H - 83

Clusters included in this Subclass