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Information on SUBCLASS 2.3.12
Subclass Accession number: 5374
Subclass: 2.3.12 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 20.0 +/- 19.1
Average RMSD (Å) : 0.660 +/- 0.182

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXhDhh
(φψ)-conformation: aababb
Pattern: [FILV][AEPT]x[ALT][knt][EGQ]x[FGTV][DP][fgy][lv]x[LV]
Conservation:0.628-0.653-0.609-0.388-0.7530.452-0.188-1.2562.3290.286-0.177-0.9941.322
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1coz_A_151coz   A2133LERAKQLGDYLVVHHHHHTTSSEEEEaaaaaaababbbb
1jnd_A_2071jnd   A207219IPALNGLVDFVNLHHHHHTT-SEEEEaaaaaaababbbb
1ovn_A_351ovn   A3547FEKTVERFPYSVVHHHHHTTSSEEEEaaaaaaabwbbbb
1qjc_A_161qjc   A2234VTRATQMFDHVILHHHHHTTSSEEEEaaaaaaababbxx
2cev_A_2032cev   A211223IAYLKERTDGVHLHHHHHTT-SEEEEaaaaaaNbabbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1coz_A_151coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE G - 16
1coz_A_151coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE H - 17
1coz_A_151coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE L - 20
1coz_A_151coz   A     CTPCYTIDINE-5'-TRIPHOSPHATE R - 23
2cev_A_2032cev   A     MNMANGANESE (II) ION D - 226
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2cev_A_2032cev   A MNAMN 301 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, A BRIDGING WATER HOH1 AND A TERMINAL WATER HOH MN 302 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH1D - 226

Clusters included in this Subclass
CLUSTER: HE.5.149