Information on SUBCLASS 2.3.4 |
Subclass Accession number: 136
Subclass: 2.3.4 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 9 Average sequence ID (%) : 10.3 +/- 14.3 Average RMSD (Å) : 0.656 +/- 0.213 Consensus geometry
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Consensus Sequence: | ppXXXh |
(φψ)-conformation: | aapabp |
Pattern: | [FILMP] | x | [adegks] | x | [acfily] | [ADEKST] | [DGKNQST] | x | [AEPST] | x | [aenp] | [itvy] | [aitv] |
Conservation: | 1.052 | -1.216 | -0.670 | -0.566 | -0.501 | 0.914 | 0.137 | -0.239 | 0.768 | -1.839 | -0.356 | 0.924 | 1.592 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dqn_A_38 | 1dqn | A | 52 | 64 | MNEYYKDVAEPVT | HHHHHTT-SS-EE | aaaaaaapabpxx |
1ebf_A_73 | 1ebf | A | 76 | 88 | LIAHLKTSPKPVI | HHHHHTT-SS-EE | aaaaaaapabpbb |
1ew0_A_139 | 1ew0 | A | 139 | 151 | LRSILDTVPDATV | HHHHHTT-SSEEE | aaaaaaaxaxxbb |
1fid_*_230 | 1fid | - | 233 | 245 | IHLISTQSAIPYA | HHHHHTSSSS-EE | aaaaaaabaxxbb |
1o5z_A_392 | 1o5z | A | 392 | 404 | PLEAIESTERATV | HHHHHHT--SEEE | aaaaaaaxaxpbx |
1o8x_A_74 | 1o8x | A | 77 | 88 | FAGYFAKMPWLA. | HHHHHTT-SSEE. | aaaaaaababbb. |
1ohe_A_293 | 1ohe | A | 299 | 311 | FLDICENAEGAIA | HHHHHHS-SSEEE | aaaaaaaxabxbb |
1opd_*_16 | 1opd | - | 22 | 34 | FVKEAKGFTSEIT | HHHHHHTSSSEEE | aaaaaaaxapxbb |
1pch_*_16 | 1pch | - | 22 | 34 | LAKEASKFSSNIT | HHHHHTT-SSEEE | aaaaaaaxapxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dqn_A_38 | 1dqn | A | MGMAGNESIUM ION | L - 68 |
1dqn_A_38 | 1dqn | A | POPPYROPHOSPHATE 2- | L - 68 |
1ebf_A_73 | 1ebf | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | D - 91 |
1ew0_A_139 | 1ew0 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | V - 151 |
1ew0_A_139 | 1ew0 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | V - 152 |
1ew0_A_139 | 1ew0 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 153 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1opd_*_16 | 1opd | * | ACTTHE ACTIVE CENTER IS COMPOSED PRIMARILY OF TWO RESIDUES WHICH ARE CRITICAL IN PHOSPHOTRANSFER, HIS 15 AND ARG 17. | R - 17 |
Clusters included in this Subclass |
CLUSTER: HE.4.239 |
CLUSTER: HE.5.33 |
CLUSTER: HE.6.71 |
CLUSTER: HE.7.39 |