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Information on SUBCLASS 2.3.4
Subclass Accession number: 136
Subclass: 2.3.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 10.3 +/- 14.3
Average RMSD (Å) : 0.656 +/- 0.213

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: ppXXXh
(φψ)-conformation: aapabp
Pattern: [FILMP]x[adegks]x[acfily][ADEKST][DGKNQST]x[AEPST]x[aenp][itvy][aitv]
Conservation:1.052-1.216-0.670-0.566-0.5010.9140.137-0.2390.768-1.839-0.3560.9241.592
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dqn_A_381dqn   A5264MNEYYKDVAEPVTHHHHHTT-SS-EEaaaaaaapabpxx
1ebf_A_731ebf   A7688LIAHLKTSPKPVIHHHHHTT-SS-EEaaaaaaapabpbb
1ew0_A_1391ew0   A139151LRSILDTVPDATVHHHHHTT-SSEEEaaaaaaaxaxxbb
1fid_*_2301fid   -233245IHLISTQSAIPYAHHHHHTSSSS-EEaaaaaaabaxxbb
1o5z_A_3921o5z   A392404PLEAIESTERATVHHHHHHT--SEEEaaaaaaaxaxpbx
1o8x_A_741o8x   A7788FAGYFAKMPWLA.HHHHHTT-SSEE.aaaaaaababbb.
1ohe_A_2931ohe   A299311FLDICENAEGAIAHHHHHHS-SSEEEaaaaaaaxabxbb
1opd_*_161opd   -2234FVKEAKGFTSEITHHHHHHTSSSEEEaaaaaaaxapxbb
1pch_*_161pch   -2234LAKEASKFSSNITHHHHHTT-SSEEEaaaaaaaxapxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dqn_A_381dqn   A     MGMAGNESIUM ION L - 68
1dqn_A_381dqn   A     POPPYROPHOSPHATE 2- L - 68
1ebf_A_731ebf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 91
1ew0_A_1391ew0   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 151
1ew0_A_1391ew0   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 152
1ew0_A_1391ew0   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 153
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1opd_*_161opd   * ACTTHE ACTIVE CENTER IS COMPOSED PRIMARILY OF TWO RESIDUES WHICH ARE CRITICAL IN PHOSPHOTRANSFER, HIS 15 AND ARG 17.R - 17

Clusters included in this Subclass
CLUSTER: HE.4.239
CLUSTER: HE.5.33
CLUSTER: HE.6.71
CLUSTER: HE.7.39