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PDB code:

Information on SUBCLASS 2.5.1

Subclass Accession number: 5403 Subclass: 2.5.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 71 Average sequence ID (%) : 13.9 +/- 16.0 Average RMSD (Å) : 0.627 +/- 0.207 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4s_A_342	1a4s	A	354	363	QAKKEGARVL	HHHHHT-EEE	aaaaagxbxa
1a8i_*_48	1a8i	-	73	82	HYYEKDPKRI	HHHHH---EE	aaaaalxpbb
1aqu_A_116	1aqu	A	117	126	SFWEKNCKMI	HHHHTT-EEE	aaaaalxxbb
1b1c_A_123	1b1c	A	131	139	RLEQLGAQR.	HHHHTT-EE.	aaaaagxbx.
1bxs_A_347	1bxs	A	359	367	SGKKEGAKL.	HHHHTT-EE.	aaaaavxxx.
1c0p_A_1139	1c0p	A	1149	1158	ELQKLGATFE	HHHHTT-EEE	aaaaavxbbb
1cdo_A_305	1cdo	A	306	315	IQLIAGRTWK	HHHHTT-EEE	aaaaagxbbb
1chu_A_260	1chu	A	261	270	ALRGEGAYLK	HHHHTT-EEE	aaaaagxbbb
1d1t_A_306	1d1t	A	306	315	MLLFTGRTWK	HHHHTT-EEE	aaaaagxbbb
1d3v_A_184	1d3v	A	189	198	IIKTLGIKYF	HHHHHT-EEE	aaaaavxxbb
1e3i_A_307	1e3i	A	308	317	VDVILGRSIN	HHHHTT-EEE	aaaaagxbbb
1e3j_A_281	1e3j	A	283	292	NACAREIDIK	HHHTTT-EEE	aaaaalxxbb
1e5k_A_157	1e5k	A	160	169	FMRLAGGHAV	HHHHTT-EEE	aaaaavxbxb
1e5x_A_225	1e5x	A	226	235	QPIANGAFVL	HHHHTT-EEE	aaaaavxxxx
1e9l_A_303	1e9l	A	308	317	TFLNEGATEV	HHHHTT-EEE	aaaaavxxxb
1euh_A_328	1euh	A	340	348	DANDKGATA.	HHHHTT-EE.	aaaaavxxx.
1f83_A_316	1f83	A	323	331	FKDKYKFVE.	HHHHTT-EE.	aaaaavxbb.
1fiq_B_362	1fiq	B	364	373	VFMASGTKLT	HHHHTT-EEE	aaaaalxxbx
1fye_A_103	1fye	A	108	117	DRVKRGALYI	HHHHTT-EEE	aaaaagxxbb
1g3m_A_115	1g3m	A	116	125	SFWEKDCKII	HHHHTT-EEE	aaaaalxxbb
1g41_A_272	1g41	A	283	292	LPLVEGSTVS	HHHHH--EEE	aaaaaSbbbx
1gny_A_157	1gny	A	158	167	EFKASEANLQ	HHHHHT-EEE	aaaaavxbbb
1gq6_A_194	1gq6	A	195	204	YARGHGVRVV	HHHHTT-EEE	aaaaavxxxb
1h7w_A_374	1h7w	A	379	388	LAKEEKCEFL	HHHHTT-EEE	aaaaavxxbb
1hc7_A_235	1hc7	A	236	245	FARAFDIKFQ	HHHHTT-EEE	aaaaalbbbx
1ht0_A_306	1ht0	A	306	315	MLLLTGRTWK	HHHHTT-EEE	aaaaagxbbb
1hzd_A_230	1hzd	A	235	244	ELIFSARVLD	HHHHHT-EEE	aaaaalxbxb
1ii2_A_392	1ii2	A	402	411	KMQKHNSRVW	HHHHHT-EEE	aaaaalxxbb
1j0a_A_110	1j0a	A	114	123	LDKIMGIETR	HHHHTT-EEE	aaaaavxxbb
1j1y_A_4	1j1y	A	5	14	FMEALGLKVL	HHHHTT-EEE	aaaaavxbxa
1j7n_A_68	1j7n	A	73	82	MYKAIGGKIY	HHHHTT-EEE	aaaaavxbbb
1jeh_A_84	1jeh	A	105	114	LFKKNKVTYY	HHHHHT-EEE	aaaaalbxxx
1jv1_A_418	1jv1	A	432	440	WVLNAGGHF.	HHHHTT-EE.	aaaaavxbb.
1k0i_A_102	1k0i	A	112	121	AREACGATTV	HHHHTT-EEE	aaaaavxxbb
1kek_A_528	1kek	A	533	542	TIANKKLKFY	HHHHTT-EEE	aaaaalxxxb
1ky8_A_342	1ky8	A	354	363	DAVEKGGRVL	HHHHTT-EEE	aaaaagxbxa
1l0l_B_82	1l0l	B	88	97	GIEAVGGKLS	HHHHTT-EEE	aaaaavxbbb
1l1s_A_56	1l1s	A	61	70	ELTGQGVRFC	HHHHTT-EEE	aaaaagxbxb
1lrz_A_130	1lrz	A	134	142	KMSNLGFEH.	HHHHTT-EE.	aaaaavxxx.
1ls6_A_116	1ls6	A	117	126	TLLDQKVKVV	HHHHTT-EEE	aaaaalxxbb
1m22_A_149	1m22	A	153	162	RLRDAGAVVL	HHHHTT-EEE	aaaaavxbxa
1m6h_A_305	1m6h	A	305	314	FQLVTGRTWK	HHHHTT-EEE	aaaaagxbbb
1mk4_A_113	1mk4	A	118	126	YHTKLGFDI.	HHHHTT-EE.	aaaaavxxb.
1nmo_A_80	1nmo	A	85	94	TLLANDINLY	HHHHTT-EEE	aaaaalxxbb
1nnh_A_12	1nnh	A	28	37	FFVKEGFKWL	HHHHTT-EEE	aaaaavxxxx
1o04_A_347	1o04	A	359	368	TGKQEGAKLL	HHHHTT-EEE	aaaaavxxxa
1o9j_A_347	1o9j	A	359	368	SGKKEGAKLE	HHHHHT-EEE	aaaaagxbxa
1ono_A_132	1ono	A	138	147	AVKQSKAQLL	HHHHHT-EEE	aaaaalbxxb
1p0c_A_1305	1p0c	A	1305	1314	LLLLTGRSLK	HHHHTT-EEE	aaaaagxbbb
1pp7_U_80	1pp7	U	86	95	NLRDLAFEQL	HHHHTT-EEE	aaaaavxbxa
1q9i_A_253	1q9i	A	264	273	NAVKRNIDLR	HHHHTT-EEE	aaaaalxxbb
1q9i_A_378	1q9i	A	379	388	AVRGNGAILV	HHHHTT-EEE	aaaaagxbbb
1qla_A_156	1qla	A	167	176	ECLKLGVSIQ	HHHHHT-EEE	aaaaavxxxb
1qo8_A_374	1qo8	A	374	383	TVRGVGAVMV	HHHHTT-EEE	aaaaaNxbbb
1qyc_A_44	1qyc	A	52	61	SFKASGANIV	HHHTTT-EEE	aaaaagxxxb
1qyi_A_217	1qyi	A	226	235	DLKGAGFELG	HHHHTT-EEE	aaaaavxxxb
1rtq_A_156	1rtq	A	164	173	QYKSEGKNVV	HHHHTT-EEE	aaaaavxxxa
1sdo_A_57	1sdo	A	67	76	KLEAKGWKES	HHHHTT-EEE	aaaaavxbxb
1set_A_355	1set	A	356	365	QARRANLRYR	HHHHHT-EEE	aaaaavbbbb
1trb_*_61	1trb	-	71	80	HATKFETEII	HHHHTT-EEE	aaaaavxxxb
1urs_A_178	1urs	A	184	193	IIGGYGGYVF	HHHHTT-EEE	aaaaavxbab
1v7c_A_114	1v7c	A	119	128	QSLVHGARIV	HHHHTT-EEE	aaaaavxxbb
1v8c_A_98	1v8c	A	104	113	YLEEWGGTRE	HHHHTT-EEE	aaaaavxbxa
1vdc_*_61	1vdc	-	71	80	QSERFGTTIF	HHHHTT-EEE	aaaaagxxbb
1ve9_A_141	1ve9	A	151	160	RLTERGVKFF	HHHTTT-EEE	aaaaavxxbb
1vj1_A_271	1vj1	A	276	285	IRKERNITRE	HHHHTT-EEE	aaaaalxxbb
1xgs_A_30	1xgs	A	40	48	MIMELGGKP.	HHHHTT-EE.	aaaaagbbx.
2hgs_A_12	2hgs	A	25	34	RALAEGVLLR	HHHHTT-EEE	aaaaavxbbx
2uag_A_79	2uag	A	83	92	AAADAGIEIV	HHHHTT-EEE	aaaaavxxbb
3grs_*_96	3grs	-	117	126	NLTKSHIEII	HHHHTT-EEE	aaaaavxxbb
3mbp_*_154	3mbp	-	160	169	LIAADGGYAF	HHHHTT-EEE	aaaaagxbab

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b1c_A_123	1b1c	A	FMNFLAVIN MONONUCLEOTIDE	A - 123
1b1c_A_123	1b1c	A	CACALCIUM ION	G - 136
1bxs_A_347	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 348
1bxs_A_347	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 349
1bxs_A_347	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	K - 352
1cdo_A_305	1cdo	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 309
1d1t_A_306	1d1t	A	ACTACETATE ION	F - 309
1d1t_A_306	1d1t	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 309
1d3v_A_184	1d3v	A	ABH2(S)-AMINO-6-BORONOHEXANOIC ACID	E - 186
1e3i_A_307	1e3i	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 311
1e3i_A_307	1e3i	A	CXFCYCLOHEXYLFORMAMIDE	I - 311
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	V - 225
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	Q - 226
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	I - 228
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	A - 229
1e5x_A_225	1e5x	A	MSESELENOMETHIONINE	N - 230
1gny_A_157	1gny	A	XYPBETA-D-XYLOPYRANOSE	Q - 167
1gny_A_157	1gny	A	XYPBETA-D-XYLOPYRANOSE	F - 169
1gny_A_157	1gny	A	XYPBETA-D-XYLOPYRANOSE	Q - 171
1h7w_A_374	1h7w	A	FADFLAVIN-ADENINE DINUCLEOTIDE	E - 376
1ht0_A_306	1ht0	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 309
1j1y_A_4	1j1y	A	MGMAGNESIUM ION	A - 8
1k0i_A_102	1k0i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 102
1l1s_A_56	1l1s	A	MSESELENOMETHIONINE	L - 62
1l1s_A_56	1l1s	A	MSESELENOMETHIONINE	Q - 65
1l1s_A_56	1l1s	A	MSESELENOMETHIONINE	V - 67
1m6h_A_305	1m6h	A	PO4PHOSPHATE ION	T - 312
1m6h_A_305	1m6h	A	PO4PHOSPHATE ION	K - 314
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	R - 80
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	N - 81
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	R - 82
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	L - 83
1pp7_U_80	1pp7	U	ZNZINC ION	V - 85
1q9i_A_253	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 253
1q9i_A_253	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 254
1q9i_A_378	1q9i	A	TEOMALATE LIKE INTERMEDIATE	E - 378
1q9i_A_378	1q9i	A	TEOMALATE LIKE INTERMEDIATE	A - 379
1q9i_A_378	1q9i	A	TEOMALATE LIKE INTERMEDIATE	R - 381
1qla_A_156	1qla	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 161
1qyi_A_217	1qyi	A	MSESELENOMETHIONINE	G - 231
1qyi_A_217	1qyi	A	MSESELENOMETHIONINE	E - 233
1rtq_A_156	1rtq	A	ZNZINC ION	Q - 177
1urs_A_178	1urs	A	MLRMALTOTRIOSE	L - 178
1urs_A_178	1urs	A	MLRMALTOTRIOSE	Y - 179
1urs_A_178	1urs	A	MLRMALTOTRIOSE	F - 180
1v7c_A_114	1v7c	A	HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID	K - 116
1ve9_A_141	1ve9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 145
1vj1_A_271	1vj1	A	MSESELENOMETHIONINE	I - 276
1vj1_A_271	1vj1	A	MSESELENOMETHIONINE	R - 280
1vj1_A_271	1vj1	A	MSESELENOMETHIONINE	I - 282
1vj1_A_271	1vj1	A	MSESELENOMETHIONINE	T - 283
3mbp_*_154	3mbp	*	GLCGLUCOSE	P - 154
3mbp_*_154	3mbp	*	GLCGLUCOSE	Y - 155
3mbp_*_154	3mbp	*	GLCGLUCOSE	F - 156

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e5k_A_157	1e5k	A	CI1CITRIC ACID BINDING SITE FOR RESIDUE 302	M - 158
1gny_A_157	1gny	A	AC3XYP BINDING SITE FOR CHAIN A	Q - 171

Clusters included in this Subclass

CLUSTER: HE.2.54

CLUSTER: HE.2.7

CLUSTER: HE.3.16

CLUSTER: HE.4.19

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