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Information on SUBCLASS 2.5.4
Subclass Accession number: 5406
Subclass: 2.5.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 24.4 +/- 22.3
Average RMSD (Å) : 0.400 +/- 0.163

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXGhXh
(φψ)-conformation: aagpbb
Pattern: xxx[filv]x[aegknst][G][AFLMV]x[GILV]x
Conservation:-0.742-0.5981.402-0.046-0.548-0.3872.3590.269-0.590-0.382-0.736
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_5101aoz   A510520EPHLHMGMGVVHHHHHTT-EEEaaaaaagxbbb
1gw0_A_5061gw0   A506516AWHVSGGLSVDHHHHHHT-EEEaaaaaagxbbb
1gyc_A_4561gyc   A456466DFHLEAGFAIVHHHHHTT-EEEaaaaaavxbbb
1hfu_A_4551hfu   A455465EFHLMNGLAIVHHHHHTT-EEEaaaaaagxbbb
1j9q_A_1421j9q   A143153PWHVVSGMNGAHHHHTTT-EEEaaaaaavxbbb
1kbv_A_1401kbv   A141151GMHIANGMYGLHHHHHTT-EEEaaaaaagxbbb
1kbv_A_2921kbv   A292302FRAFNKGALGQHHHHHSS-EEEaaaaaagxbbb
1kv7_A_5031kv7   A503513LEHEDTGMMLGHHHHHTT-EEEaaaaaagxbbb
1oe1_A_1361oe1   A137147PWHVVSGMSGTHHHHHTT-EEEaaaaaagxbbb
2hgs_A_122hgs   A2434DRALAEGVLLRHHHHHTT-EEEaaaaaavxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_5101aoz   A     CUCOPPER (II) ION H - 512
1aoz_A_5101aoz   A     CUCOPPER (II) ION L - 513
1aoz_A_5101aoz   A     C2OCU-O-CU LINKAGE L - 513
1aoz_A_5101aoz   A     CUCOPPER (II) ION M - 517
1gw0_A_5061gw0   A     CUCOPPER (II) ION H - 508
1gw0_A_5061gw0   A     CUCOPPER (II) ION V - 509
1gyc_A_4561gyc   A     CUCOPPER (II) ION H - 458
1gyc_A_4561gyc   A     IPAISOPROPYL ALCOHOL H - 458
1gyc_A_4561gyc   A     CUCOPPER (II) ION L - 459
1gyc_A_4561gyc   A     IPAISOPROPYL ALCOHOL L - 459
1gyc_A_4561gyc   A     IPAISOPROPYL ALCOHOL E - 460
1gyc_A_4561gyc   A     IPAISOPROPYL ALCOHOL A - 461
1gyc_A_4561gyc   A     IPAISOPROPYL ALCOHOL G - 462
1gyc_A_4561gyc   A     CUCOPPER (II) ION F - 463
1hfu_A_4551hfu   A     CUCOPPER (II) ION H - 457
1hfu_A_4551hfu   A     CUCOPPER (II) ION L - 458
1hfu_A_4551hfu   A     CUCOPPER (II) ION L - 462
1j9q_A_1421j9q   A     NO2NITRITE ION V - 142
1j9q_A_1421j9q   A     CUCOPPER (II) ION H - 145
1j9q_A_1421j9q   A     CUCOPPER (II) ION M - 150
1kbv_A_1401kbv   A     NO2NITRITE ION V - 140
1kbv_A_1401kbv   A     CUCOPPER (II) ION H - 143
1kbv_A_1401kbv   A     CUCOPPER (II) ION I - 144
1kbv_A_1401kbv   A     NO2NITRITE ION I - 144
1kbv_A_1401kbv   A     CUCOPPER (II) ION M - 148
1kbv_A_2921kbv   A     NO2NITRITE ION F - 295
1kv7_A_5031kv7   A     CUCOPPER (II) ION L - 503
1kv7_A_5031kv7   A     C2OCU-O-CU LINKAGE L - 503
1kv7_A_5031kv7   A     CUCOPPER (II) ION H - 505
1kv7_A_5031kv7   A     CUCOPPER (II) ION E - 506
1kv7_A_5031kv7   A     C2OCU-O-CU LINKAGE E - 506
1kv7_A_5031kv7   A     CUCOPPER (II) ION M - 510
1kv7_A_5031kv7   A     CUCOPPER (II) ION M - 511
1kv7_A_5031kv7   A     C2OCU-O-CU LINKAGE M - 511
1oe1_A_1361oe1   A     CUCOPPER (II) ION H - 139
1oe1_A_1361oe1   A     CUCOPPER (II) ION M - 144
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gw0_A_5061gw0   A AC2CU BINDING SITE FOR CHAIN AH - 508
1gw0_A_5061gw0   A AC2CU BINDING SITE FOR CHAIN AL - 513
1gyc_A_4561gyc   A CU4CU BINDING SITE FOR CHAIN AH - 458
1gyc_A_4561gyc   A IP2IPA BINDING SITE FOR CHAIN AE - 460
1gyc_A_4561gyc   A CU4CU BINDING SITE FOR CHAIN AF - 463
1hfu_A_4551hfu   A T1TYPE 1 CU BINDING SITE.H - 457
1hfu_A_4551hfu   A T1TYPE 1 CU BINDING SITE.L - 462
1oe1_A_1361oe1   A AC1CU BINDING SITE FOR CHAIN AH - 139
1oe1_A_1361oe1   A AC1CU BINDING SITE FOR CHAIN AM - 144

Clusters included in this Subclass
CLUSTER: HE.3.62
CLUSTER: HE.4.100