Logo
Information on SUBCLASS 2.5.6
Subclass Accession number: 5408
Subclass: 2.5.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 12.2 +/- 13.3
Average RMSD (Å) : 0.925 +/- 0.150

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXchph
(φψ)-conformation: aagpbb
Pattern: xxxx[AER]x[AIK]xx[DGN][GIKV][HKRY][LV]xx
Conservation:-0.305-0.911-0.144-0.5580.602-0.385-0.2730.912-0.7591.456-1.2900.6812.338-0.454-0.911
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gee_A_1561gee   A171185TLALEYAPKGIRVNNHHHHHHGGGT-EEEEaaaaaaaaavxxbbb
1i8t_A_111i8t   A1529VCANELKKLNKKVLVHHHHHHGGGT--EEEaaaaaaaaavxxbbb
1qgd_A_5301qgd   A530544EEQLANIARGGYVLKHHHHHHGGGS-EEEEaaaaaaaaagbbxab
2nac_A_2012nac   A205219AVLRRLAPFDVHLHYHHHHHHGGGT-EEEEaaaaaaaaavxxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gee_A_1561gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 158
1gee_A_1561gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 162
1gee_A_1561gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 187
1gee_A_1561gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 188
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 11
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 12
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 13
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 30

Clusters included in this Subclass
CLUSTER: HE.6.164