Information on SUBCLASS 2.5.6 |
Subclass Accession number: 5408
Subclass: 2.5.6 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 12.2 +/- 13.3 Average RMSD (Å) : 0.925 +/- 0.150 Consensus geometry
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Consensus Sequence: | hXchph |
(φψ)-conformation: | aagpbb |
Pattern: | x | x | x | x | [AER] | x | [AIK] | x | x | [DGN] | [GIKV] | [HKRY] | [LV] | x | x |
Conservation: | -0.305 | -0.911 | -0.144 | -0.558 | 0.602 | -0.385 | -0.273 | 0.912 | -0.759 | 1.456 | -1.290 | 0.681 | 2.338 | -0.454 | -0.911 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gee_A_156 | 1gee | A | 171 | 185 | TLALEYAPKGIRVNN | HHHHHHGGGT-EEEE | aaaaaaaaavxxbbb |
1i8t_A_11 | 1i8t | A | 15 | 29 | VCANELKKLNKKVLV | HHHHHHGGGT--EEE | aaaaaaaaavxxbbb |
1qgd_A_530 | 1qgd | A | 530 | 544 | EEQLANIARGGYVLK | HHHHHHGGGS-EEEE | aaaaaaaaagbbxab |
2nac_A_201 | 2nac | A | 205 | 219 | AVLRRLAPFDVHLHY | HHHHHHGGGT-EEEE | aaaaaaaaavxxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gee_A_156 | 1gee | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | Y - 158 |
1gee_A_156 | 1gee | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | K - 162 |
1gee_A_156 | 1gee | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 187 |
1gee_A_156 | 1gee | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | P - 188 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | L - 11 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | F - 12 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 13 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 30 |
Clusters included in this Subclass |
CLUSTER: HE.6.164 |