Information on SUBCLASS 3.2.3 |
Subclass Accession number: 5460
Subclass: 3.2.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 19 Average sequence ID (%) : 13.7 +/- 17.3 Average RMSD (Å) : 0.800 +/- 0.167 Consensus geometry
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Consensus Sequence: | XXcXphX |
(φψ)-conformation: | aalbpbb |
Pattern: | [fhilmvy] | x | [adekqrst] | x | x | [adgn] | x | [degknst] | [acfipvy] | [kpqrst] | x | x | x |
Conservation: | 0.326 | -0.504 | 0.326 | -0.350 | -0.086 | 2.955 | -0.579 | 0.625 | -0.459 | -0.022 | -0.819 | -0.890 | -0.522 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dtd_A_572 | 1dtd | A | 586 | 598 | LSRLHGTKYKVGP | HHHHH----EEEE | aaaaavxbbbbex |
1ek6_A_277 | 1ek6 | A | 284 | 296 | MEKASGKKIPYKV | HHHHH-S---EEE | aaaaavbxbwbbx |
1gt9_1_39 | 1gt9 | 1 | 45 | 57 | YFASLGVSAPQVV | HHHHTT-----EE | aaaaavbxxxxbb |
1h3f_A_198 | 1h3f | A | 207 | 219 | VQRAYGQSPQVCF | HHHHTT----EEE | aaaaavbxxpxbb |
1hc7_A_168 | 1hc7 | A | 186 | 198 | AREYAAIPVIEGL | HHHHH----EEEE | aaaaalbwbbxbx |
1j09_A_213 | 1j09 | A | 219 | 231 | LYRAFGWEAPRFY | HHHHHT----EEE | aaaaavbxxwxbb |
1jih_A_233 | 1jih | A | 252 | 264 | IKDILGYTTSCGL | HHHHH----EEEE | aaaaavxxbbbbb |
1kwm_A_216 | 1kwm | A | 230 | 242 | LASLHGTKYTYGP | HHHHH----EEEE | aaaaavxbbbbex |
1m4l_A_216 | 1m4l | A | 230 | 242 | LKSLYGTSYKYGS | HHHHH----EEEE | aaaaavxxbbbex |
1nhp_*_343 | 1nhp | - | 345 | 357 | MAQKLGKETKAVT | HHHHHT---EEEE | aaaaavbxbbbbb |
1nmo_A_139 | 1nmo | A | 146 | 157 | IEARLGRKPLWC. | HHHHHTS--EEE. | aaaaavbxxxbb. |
1nsa_*_216 | 1nsa | - | 230 | 242 | LASLYGTSYSYGP | HHHHH----EEEE | aaaaavpxbbbex |
1nzj_A_195 | 1nzj | A | 204 | 216 | LYQLFGWKVPDYI | HHHHHT----EEE | aaaaavbxxwxbb |
1p5h_A_169 | 1p5h | A | 186 | 198 | MRHKTGRGQKVAV | HHHHHS---EEEE | aaaaavbxbxbbb |
1pze_A_58 | 1pze | A | 69 | 81 | VTSVVDTNVSVRA | HHHHHT----EEE | aaaaavbbbxbbx |
1q7e_A_178 | 1q7e | A | 188 | 198 | HREKTGRGQRV.. | HHHHHS---EE.. | aaaaavbxbxb.. |
1qlt_A_433 | 1qlt | A | 446 | 458 | RCQEAGLDFIGTF | HHHHTT----EEE | aaaaavbxxbbbb |
1qu9_A_84 | 1qu9 | A | 94 | 105 | FFTEHNATFPAR. | HHHHTT----EE. | aaaaalbxxwxb. |
1t2d_A_50 | 1t2d | A | 50 | 62 | TNVMAYSNCKVSG | HHHHHT----EEE | aaaaalbbbxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ek6_A_277 | 1ek6 | A | UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE | V - 277 |
1ek6_A_277 | 1ek6 | A | MGMAGNESIUM ION | E - 285 |
1ek6_A_277 | 1ek6 | A | MGMAGNESIUM ION | K - 291 |
1h3f_A_198 | 1h3f | A | TYBTYROSINAL | N - 200 |
1j09_A_213 | 1j09 | A | GLUGLUTAMIC ACID | H - 216 |
1nmo_A_139 | 1nmo | A | MSESELENOMETHIONINE | E - 141 |
1q7e_A_178 | 1q7e | A | MSESELENOMETHIONINE | L - 178 |
1q7e_A_178 | 1q7e | A | MSESELENOMETHIONINE | L - 179 |
1q7e_A_178 | 1q7e | A | MSESELENOMETHIONINE | I - 180 |
1q7e_A_178 | 1q7e | A | MSESELENOMETHIONINE | G - 181 |
1q7e_A_178 | 1q7e | A | MSESELENOMETHIONINE | V - 198 |
1qu9_A_84 | 1qu9 | A | CSPS-PHOSPHOCYSTEINE | F - 84 |
1qu9_A_84 | 1qu9 | A | CSPS-PHOSPHOCYSTEINE | N - 88 |
1qu9_A_84 | 1qu9 | A | CSPS-PHOSPHOCYSTEINE | R - 105 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h3f_A_198 | 1h3f | A | AC6TYB BINDING SITE FOR CHAIN A | N - 200 |
Clusters included in this Subclass |
CLUSTER: HE.4.86 |
CLUSTER: HE.5.31 |
CLUSTER: HE.6.100 |
CLUSTER: HE.6.64 |
CLUSTER: HE.7.79 |