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Information on SUBCLASS 3.2.9
Subclass Accession number: 5466
Subclass: 3.2.9 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 21.4 +/- 22.8
Average RMSD (Å) : 0.737 +/- 0.169

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XhGXXhX
(φψ)-conformation: aalbpbb
Pattern: xxxxxx[aly][gq]xx[aimpvy]xx
Conservation:-1.0710.330-0.619-0.282-0.630-0.1710.8402.856-0.4400.483-0.414-0.392-0.490
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dq3_A_2661dq3   A273285THYLNALGIKARIHHHHHTTT---EEaaaaaaavxxbbb
1ex2_A_121ex2   A1527KELLDLLQLPYSIHHHHHTT----EEaaaaaaalbxbbb
1fbt_A_571fbt   A5971IQTAEALGVPYEQHHHHHTTSS--EEaaaaaaagxwbbb
1gc5_A_781gc5   A8597ILRSIKLGKAMEWHHHHHHS---EEEaaaaaaalbxbbb
1k6m_A_3061k6m   A309321IQTAEALGVPYEQHHHHHTT-S--EEaaaaaaavbwbbx
1mo9_A_4041mo9   A404416EEEARAAGHEIVTHHHHHHTT--EEEaaaaaaavxxbbb
1q0p_A_2581q0p   A272284IEKVASYGVKPRYHHHHHTTT---EEaaaaaaavbbxxb
1rj9_A_1151rj9   A123135GRYYQNLGKKVMFHHHHHTTT--EEEaaaaaaavxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ex2_A_121ex2   A     PO4PHOSPHATE ION R - 14
1fbt_A_571fbt   A     MSESELENOMETHIONINE R - 57
1fbt_A_571fbt   A     PO4PHOSPHATE ION R - 57
1fbt_A_571fbt   A     MSESELENOMETHIONINE T - 58
1fbt_A_571fbt   A     MSESELENOMETHIONINE I - 59
1fbt_A_571fbt   A     MSESELENOMETHIONINE Q - 60
1fbt_A_571fbt   A     MSESELENOMETHIONINE Q - 71
1k6m_A_3061k6m   A     PO4PHOSPHATE ION R - 307
1rj9_A_1151rj9   A     MGMAGNESIUM ION K - 115
1rj9_A_1151rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER K - 115
1rj9_A_1151rj9   A     MGMAGNESIUM ION T - 116
1rj9_A_1151rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 116
1rj9_A_1151rj9   A     MGMAGNESIUM ION T - 117
1rj9_A_1151rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 117
1rj9_A_1151rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 118
1rj9_A_1151rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER K - 121

Clusters included in this Subclass
CLUSTER: HE.5.147
CLUSTER: HE.6.204
CLUSTER: HE.7.45