Logo
Information on SUBCLASS 3.3.10
Subclass Accession number: 5485
Subclass: 3.3.10 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 53473 (>75 %)  53474 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 13.9 +/- 13.3
Average RMSD (Å) : 0.633 +/- 0.058

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXXXphV
(φψ)-conformation: aalpabb
Pattern: [AKV][DEY][IMV][LW]xxx[CPT][DQR][IY][V][APV]
Conservation:-0.989-0.4070.8730.422-1.454-0.0580.291-0.523-0.1740.3902.385-0.756
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i6l_A_1311i6l   A131142ADILLYNTDIVPHHHHTTT-SEEEaaaaaalxabbx
1qas_A_5651qas   A565576VEMWNGGCQIVAHHHHTTT--EEEaaaaaavpabxx
1qpg_*_371qpg   -4758KYVLEHHPRYVVHHHHTT--SEEEaaaaaalxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i6l_A_1311i6l   A     MSESELENOMETHIONINE A - 131
1i6l_A_1311i6l   A     MSESELENOMETHIONINE D - 132
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP D - 132
1i6l_A_1311i6l   A     MSESELENOMETHIONINE I - 133
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP I - 133
1i6l_A_1311i6l   A     MSESELENOMETHIONINE L - 134
1i6l_A_1311i6l   A     MSESELENOMETHIONINE L - 135
1i6l_A_1311i6l   A     MSESELENOMETHIONINE Y - 136
1i6l_A_1311i6l   A     MSESELENOMETHIONINE N - 137
1i6l_A_1311i6l   A     MSESELENOMETHIONINE D - 139
1i6l_A_1311i6l   A     MSESELENOMETHIONINE V - 141
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP V - 141
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP P - 142
1qpg_*_371qpg   *     3PG3-PHOSPHOGLYCERIC ACID R - 38

Clusters included in this Subclass
CLUSTER: HE.4.351